Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01525 ATGGGAAAAAGAGTTGCGTCCTTTTTTCTTCCCTACAGAGCCTTGTTCTTCTCCTCCACCACTGAAACCCCCAGCCTTTACTCCTTCCTCCAGCCCTCAGTCTTTACCCTCACCATAAACAAGCAGCAACCCATTTCAGAAGGCTCCCCAAAGGCACCAACTTTCCTCTCACCTTCCCAACACTCCACTCTCGAAACCACCCTCCACAAGTCCCTCCTAAGCAGCAACACTGATGAGGCATGGAAGTCCTTCAAGGCACTCACCACCCACCGAGCCTTCCCTCCCAAACCCCTCACCAATTCCCTTCTCTCTCACCTCTCCTCCCTTGGTGACACCCTCAATCTCAAGAGGGCATTTGCCTCTGCTCTCTTTCTCATGGAGAAGAACCCCTTGTTGCTCCAACATGACACCCTCCACCACATGCTCCTCTCCATGAAGGCTGCCAACACTGCAGCCCCTGCATTTGCCCTTGTCAGGTCCATGCTCAGGTTCAGGTTCTTTGTTCCTTTTCATGTTTGGGGGCCTGTGCTTGTTGAGATCAGTAGGAACTGTGGTAACCTTGCTGCTTTCTTGAGGCTCTTTGAGGAGAATTGTAGGGTAGCTCTTGAGGAGAGAGTTGAGTTCATGAAGCCTGATGTTGGTGCTTGCAATGCAGCACTGGAAGGTTGCTGCTGTGAGCTTGAGTCTGTAAGTGATGCTGAGAGGATTGTGGAGACAATGTCAAGTCTAGGGGTTAGGCCTGATGAGTTCAGTTTTGGGTTTCTGGGGTATTTGTATGCACTCAAGGGATTGGAAGAGAGGATTAGGGAGTTAGAAGTTTTGATGGATGGGTTTGGCTGTTTGAACAAGAAGGGTTTTTATTGTAATTTGATTAAGGGTTACGTTAAGTCTGAGAATTTGGCTTCTGTGGAGGCAACTATTGTTAGATTTCTGAATGATGGATGTGGGAAGGATTGGGGTTTTGGTGTTGAAACTTTTTGTGAAGTGATTAAGGTTTATTTTCAGAAGGGAAATATCAAGGGGTTGGCTAATTTGATTGTTAAAGCTCAAAAGATAGAGGGTTCAAATATTGTGGTTGATAGGTCTATAGGGTATGGAATTGTTAATGCGCGTGTTAGTATTGGACTATCTGATAAAGCACATAGTATTCTTGATGAGATGAATGTTCAGGGGGCCTCTGTGGGTCTTGGGGTCTATATACCTATCTTGAAGGCTTACTGTAAAGAAAATAGAACTGCTGAGGCTACTCAATTGGTGATGGAGATTAGTAATTCCGGTCTTCAGTTGGATGTGGGAACCTATGATGCTTTGATAGAAGCATCCATGTGCAGCCAAGATTTTCAGTCAGCGTTTTCACTGTTTAGGGACATGAGAGAGGCAAGGATTCCTGACTTGAAAGGGAGTTACTTAACTATAATGACAGGTTTGATGGAAAAACATCGGCCTGAGTTGATGGCAGCTTTCTTGGATGAGGTGGTTGAAGATCCTAGGATTGATGTAGGTACTCATGATTGGAATTCTATCATCCATGCTTTCTGTAAAGCTGGGAGACTTGACGATGCAAGAAGAACTTTTAGAAGGATGACGTTCCTGCAGTTTGAGCCAAACGATCAGACATACTTGTCTATGATTAATGGATATGTCTTGGCTGAGAAATATTTTCTCGTGCTGATGTTGTGGAACGAGGTTAAGAGGAAGCTATCCATGGATGGGCAGAAGGGGATCAAGTTTGACCATAATTTGGTTGATGCGTTCCTTTATGCTATGGTCAAGGGTGGTTTCTTTGATGCTGTTATGCAAGTTGTGGAGAAAGCTAATGAGATGAAAATATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACCCATAAAAAGCTCAGGGTGGCAAAGTTAAGGAAAAGAAATTTTAAAAAAATGGAAGCTCTTATTGCTTTCAAGAACTGGGCTGGCTTAAATGCCTGA 1968 0.4436 MGKRVASFFLPYRALFFSSTTETPSLYSFLQPSVFTLTINKQQPISEGSPKAPTFLSPSQHSTLETTLHKSLLSSNTDEAWKSFKALTTHRAFPPKPLTNSLLSHLSSLGDTLNLKRAFASALFLMEKNPLLLQHDTLHHMLLSMKAANTAAPAFALVRSMLRFRFFVPFHVWGPVLVEISRNCGNLAAFLRLFEENCRVALEERVEFMKPDVGACNAALEGCCCELESVSDAERIVETMSSLGVRPDEFSFGFLGYLYALKGLEERIRELEVLMDGFGCLNKKGFYCNLIKGYVKSENLASVEATIVRFLNDGCGKDWGFGVETFCEVIKVYFQKGNIKGLANLIVKAQKIEGSNIVVDRSIGYGIVNARVSIGLSDKAHSILDEMNVQGASVGLGVYIPILKAYCKENRTAEATQLVMEISNSGLQLDVGTYDALIEASMCSQDFQSAFSLFRDMREARIPDLKGSYLTIMTGLMEKHRPELMAAFLDEVVEDPRIDVGTHDWNSIIHAFCKAGRLDDARRTFRRMTFLQFEPNDQTYLSMINGYVLAEKYFLVLMLWNEVKRKLSMDGQKGIKFDHNLVDAFLYAMVKGGFFDAVMQVVEKANEMKIFVDKWRYKQAFMETHKKLRVAKLRKRNFKKMEALIAFKNWAGLNA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01525 655 NCBIfam pentatricopeptide repeat 505 536 IPR002885 -
Vian10g01525 655 Pfam Pentatricopeptide repeat domain 418 462 IPR002885 -
Vian10g01525 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 247 IPR002885 -
Vian10g01525 655 PANTHER BNAC05G43320D PROTEIN 18 654 - -
Vian10g01525 655 Gene3D Tetratricopeptide repeat domain 177 365 IPR011990 GO:0005515
Vian10g01525 655 Gene3D Tetratricopeptide repeat domain 489 652 IPR011990 GO:0005515
Vian10g01525 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Vian10g01525 655 Gene3D Tetratricopeptide repeat domain 366 481 IPR011990 GO:0005515
Vian10g01525 655 Pfam PPR repeat family 505 547 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01525 Vian-Chr10 25956974 25958941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01525 209 607 Glycosyltransferase AT1G05670 19.059 9.29e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01525 - - gmx:100811600 1103.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01525 10 25956974 25958941 Vian10g01525 10 25956974 25958941 ECH