Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01501 ATGCTCAGCTCGAGGCAATCCTTGTACATCTCTTCCTCTTCTTCTCCTTCTTCTTCTTCATTGTTTTGTATCATTCTCCTCCAACTTACTTTTCTCTATGGCATTGCCTTCTCTGCAAATCACGAAGCTTCAACTCTCTTCTCTTGGCTCCATGCTTCTGCATCACCACCTCCTCCTTCTTTCTCCAACTGGAACATTCTTCATTCCAATCCATGCAACTGGACATTCATAACATGCTCCTCACTAGGCTTTGTCACTGACATCAACATACAATCCATCCCTCTAGAGCTTCCTATACCTTCCAACCTCTCTTCATTTCACTCTCTTCAAAAGCTTGTCTTATCTGATTCCAATCTAACTGGAACCATCCCTTCAGACATTGGTGATTGCTCTTCCCTCACTGTCATTGACCTCAGCTCCAACAATCTTGTTGGTTCAATTCCTGCAAGCATTGGAAAGCTCCAGAAACTTCAGAACTTGTCTTTGAACTCTAACCAGCTTACTGGAAGGATCCCAGTGGAGTTAAGCAACTGCATTGTTTTAAAAAATCTACTCCTTTTTGACAATCAGATAAGTGGGACTATCCCACCTGAGCTGGGGAAGTTGTCACAACTTGAGTCCCTAAGAGCAGGAGGGAACAAAGACATAGTTGGGAAAATTCCTGAAGAGCTAGGAGAATGCAGCAATTTGACAGTTTTGGGGCTGGCTGATACCAGAATATCTGGTTCTTTGCCTGCTTCTTTGGGTAAGCTCACAAAGCTTCAGACTTTGTCCATCTATACCACCATGCTGTCCGGTGAAATTCCACCGGAGTTAGGTAACTGTTCTGAGCTTGTTAATTTGTTCTTGTATGAAAATAGCTTATCAGGGTCTATTCCATCTGAGCTTGGCAAGCTCAAGAAGCTGGAACAGTTGTTTTTCTGGCAGAATGGTCTTTTGGGGGCTATCCCAGAAGAGATTGGTAACTGTACAAGCTTGAGAAAATTTGATTTCTCCTTAAATTCTCTATCTGGGACCATACCTGTATCTTTGGGGGGTCTCTTGAATCTAGAGGAGTTTATGATTAGTGATAACAATGTGTCTGGTTCAATACCTTCCAGTCTTTCAAATGCTAAAAATCTTCAACAGTTACAAGTTGACACAAACCAGCTCTCAGGCTTAATTCCTCCAGAGCTTGGTCAGCTGTCAAACCTCATGGTGTTCTTAGCTTGGCAGAACCAGCTTGAGGGAAGCATTCCCTCCACTTTGGGGAACTGCAGTAATCTCCAAGCACTGGACTTGTCACGCAATGCACTCACTGGTAGTATTCCCGTTGGCCTATTCCAGCTCCAAAACCTCACGAAACTGCTTCTGATTTCCAATGACATATCAGGTTTCATACCAAATGAAATAGGCAGTTGCAGCTCCCTTATAAGGTTGAGGCTTGGAAACAACAGGATTACTGGTAGCATTCCCAAGACAATAGGAAACCTGAAGAGCTTGAACTTTTTAGACCTCTCTGGGAACCGCCTCTCCGGTCCAGTGCCTGATGAGATTGGAAGCTGCTCTGAACTGCAAATGATAGACTTAAGCAGCAACAACTTAGAAGGTCCTCTGCCTAATTATTTATCTTCACTATCAGCAGTTCAGGTTTTGGATGCATCTTCCAACAGGTTTTCTGGTCCTTTACCAGCAAGTTTGGGCCGTCTTGTTTCTCTGAGTAAGCTAATCCTAAGCAATAACTTGTTTTCTGGACCTATTCCTGCATCGTTGAGCCTATGTTCAAATCTCCAGCTGCTTGATCTTAGCAGCAACAACCTCAGTGGAAACATACCAGCTGAGCTTGGCCGGATTGAGACTCTAGAAATTGCTCTTAATCTTAGTTGCAATTCACTACGTGGAATAATTCCAGCTCAGATATCTTCTCTTAACAAGCTTTCCATATTGGACCTCTCACACAACCAGTTGGAAGGAGATTTGAAACCTCTTGCTGAGTTAGACAACCTTGTCTCACTCAATGTTTCTTACAACAAATTTTCTGGCTGTCTTCCAGATAACAAGCTTTTCAGGCAGTTGACATCAAAAGACTTCACTGAAAATCAAGGGCTCTCATGCTTTGTGAAGGATTCCAGCAAGACTGATATGTCACTGAACGGAAATGAAGTAAGGAAATCGCAAAGGCTTAAGCTAGCCATTGGATTGCTGATAGCCTTGACAGTCATAATGATCGTTATGGGGATAACTGCTGTCATCAAAGCAAGGAGAGTTATTAGAGATGATGATTCAGAACTGGGTGACTCGTGGCCATGGCAGTTCATACCATTTCAGAAGCTAAACTTTTCAGTGGAACAAATACTGAGATGCTTAGTTGATAGAAATATTATTGGAAAGGGATGTTCTGGTGTTGTATATAGAGCTGAAATGGACAATGGTGAAGTGATTGCTGTGAAGAAATTGTGGCCAACAACTATTAACGCAGAAGAGGCATTTAAGGAAGAAAAAAGTGGAGTTCGTGATTCATTCTCAGCTGAGGTCAAGACCCTTGGCTCAATCCGTCATAAGAACATTGTCAGATTCTTGGGGTGCTGCTGGAACAGACAAACAAGATTGCTTATTTTCGATTACATGCCGAATGGAAGTTTGAGTAGTCTACTTCATGAGAGGAGTGGAAATTCTCTGGAATGGGAACTTAGACAGAAAAAGGGTCTTGAAGTGCTTGATCCCAGCTTACTCTCTAGACCAGAATCAGAGATAGAGGAAATGATGCAGGCATTGGGAATAGCATTATTGTGTGTGAACTCATCTCCTGATGAAAGGCCAACAATGAGAGATATCGCGGCTATGCTGAAGGAGATAAAGCATGAAAGGGAGGAGTATGCAAAATTTGATGTGCTTCTAAAAGGGTCCCCTGCAAATGGTGCATCTGGGAATAAAAACTCTGGTGGAGTTCTGCCAACAGCTTCTTCATCAGTACCAGTCATGCAAACTTTGAAAACAAAAAGCAATAACTCAAGCTTCTCTGTGTCTTCTCTGCTGCATTCATCTTCAAGTGTCAAGATGGGTTCCAAATGA 3051 0.4264 MLSSRQSLYISSSSSPSSSSLFCIILLQLTFLYGIAFSANHEASTLFSWLHASASPPPPSFSNWNILHSNPCNWTFITCSSLGFVTDINIQSIPLELPIPSNLSSFHSLQKLVLSDSNLTGTIPSDIGDCSSLTVIDLSSNNLVGSIPASIGKLQKLQNLSLNSNQLTGRIPVELSNCIVLKNLLLFDNQISGTIPPELGKLSQLESLRAGGNKDIVGKIPEELGECSNLTVLGLADTRISGSLPASLGKLTKLQTLSIYTTMLSGEIPPELGNCSELVNLFLYENSLSGSIPSELGKLKKLEQLFFWQNGLLGAIPEEIGNCTSLRKFDFSLNSLSGTIPVSLGGLLNLEEFMISDNNVSGSIPSSLSNAKNLQQLQVDTNQLSGLIPPELGQLSNLMVFLAWQNQLEGSIPSTLGNCSNLQALDLSRNALTGSIPVGLFQLQNLTKLLLISNDISGFIPNEIGSCSSLIRLRLGNNRITGSIPKTIGNLKSLNFLDLSGNRLSGPVPDEIGSCSELQMIDLSSNNLEGPLPNYLSSLSAVQVLDASSNRFSGPLPASLGRLVSLSKLILSNNLFSGPIPASLSLCSNLQLLDLSSNNLSGNIPAELGRIETLEIALNLSCNSLRGIIPAQISSLNKLSILDLSHNQLEGDLKPLAELDNLVSLNVSYNKFSGCLPDNKLFRQLTSKDFTENQGLSCFVKDSSKTDMSLNGNEVRKSQRLKLAIGLLIALTVIMIVMGITAVIKARRVIRDDDSELGDSWPWQFIPFQKLNFSVEQILRCLVDRNIIGKGCSGVVYRAEMDNGEVIAVKKLWPTTINAEEAFKEEKSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRQTRLLIFDYMPNGSLSSLLHERSGNSLEWELRQKKGLEVLDPSLLSRPESEIEEMMQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSPANGASGNKNSGGVLPTASSSVPVMQTLKTKSNNSSFSVSSLLHSSSSVKMGSK 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01501 1016 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 214 437 - -
Vian10g01501 1016 SUPERFAMILY RNI-like 111 504 - -
Vian10g01501 1016 PRINTS Leucine-rich repeat signature 636 649 - -
Vian10g01501 1016 PRINTS Leucine-rich repeat signature 422 435 - -
Vian10g01501 1016 SMART LRR_typ_2 347 371 IPR003591 -
Vian10g01501 1016 SMART LRR_typ_2 299 323 IPR003591 -
Vian10g01501 1016 SMART LRR_typ_2 636 660 IPR003591 -
Vian10g01501 1016 SMART LRR_typ_2 154 178 IPR003591 -
Vian10g01501 1016 SMART LRR_typ_2 491 515 IPR003591 -
Vian10g01501 1016 SMART LRR_typ_2 563 587 IPR003591 -
Vian10g01501 1016 SMART LRR_typ_2 419 443 IPR003591 -
Vian10g01501 1016 SMART LRR_typ_2 106 130 IPR003591 -
Vian10g01501 1016 Gene3D Ribonuclease Inhibitor 38 197 IPR032675 -
Vian10g01501 1016 Gene3D Ribonuclease Inhibitor 374 439 IPR032675 -
Vian10g01501 1016 Gene3D Transferase(Phosphotransferase) domain 1 885 959 - -
Vian10g01501 1016 Gene3D Ribonuclease Inhibitor 534 616 IPR032675 -
Vian10g01501 1016 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 438 532 - -
Vian10g01501 1016 Pfam Leucine rich repeat 618 672 IPR001611 GO:0005515
Vian10g01501 1016 Pfam Leucine rich repeat 108 167 IPR001611 GO:0005515
Vian10g01501 1016 ProSiteProfiles Protein kinase domain profile. 782 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01501 1016 Pfam Protein tyrosine and serine/threonine kinase 786 888 IPR001245 GO:0004672|GO:0006468
Vian10g01501 1016 PANTHER UNNAMED PRODUCT 309 898 - -
Vian10g01501 1016 ProSiteProfiles Leucine-rich repeat profile. 638 660 IPR001611 GO:0005515
Vian10g01501 1016 FunFam Putative LRR receptor-like serine/threonine-protein kinase 617 702 - -
Vian10g01501 1016 MobiDBLite consensus disorder prediction 987 1016 - -
Vian10g01501 1016 Gene3D Ribonuclease Inhibitor 198 373 IPR032675 -
Vian10g01501 1016 ProSitePatterns Protein kinases ATP-binding region signature. 788 811 IPR017441 GO:0005524
Vian10g01501 1016 Gene3D Phosphorylase Kinase; domain 1 768 868 - -
Vian10g01501 1016 SUPERFAMILY RNI-like 364 698 - -
Vian10g01501 1016 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 765 868 - -
Vian10g01501 1016 FunFam LRR receptor-like serine/threonine-protein kinase 537 612 - -
Vian10g01501 1016 SUPERFAMILY Protein kinase-like (PK-like) 760 899 IPR011009 -
Vian10g01501 1016 FunFam Nuclear pore complex protein NUP107 39 191 - -
Vian10g01501 1016 Pfam Leucine rich repeat N-terminal domain 39 80 IPR013210 -
Vian10g01501 1016 Gene3D Ribonuclease Inhibitor 440 533 IPR032675 -
Vian10g01501 1016 Gene3D Ribonuclease Inhibitor 617 703 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01501 Vian-Chr10 25605426 25609044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01501 892 961 Receptor kinase-like Gene Family AT5G56040 38.571 1.02e-09 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian10g01501 PK_Tyr_Ser-Thr 1.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01501 - - gmx:100818541 1520.75