Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01500 ATGTTTGCTTTCCACTTTCACAACAATTCCATACAGCAATTCCATAATAGTCTTCACTCTCAACAAATGCCTTCTAACGCCATCGTCCAATACAGCTCTTCTTCATCTCATGTAATTAACACATACGACGTATTTGTGAGCTTCCGTGGTGAAGACACGCGCAACAACTTTACTGGTTTTCTCTTTCAAGCTCTCCGCAGAAAAGGCATCCATGCCTTCAAAGATGATCAAGATTTAAAAAAAGGTGAATCCATTGCACCCGAGCTGCTGCAAGCCATTCAAGCCTCTCGACTTTTCATTATTGTCTTCTCAAACAACTATGCTTCCTCCATTTGGTGCTTGCGTGAACTCGCAGAGATTCGTAACTGCGCTCAAACTTCGGCAAGACGTATTATACCTATATTCTATGATGTTGATCCTTCGGTGGTTCGCAAACAGAGTGGATGTTATGACGTATCATTTGCAGAACACGAATACAGATTCAGAGAAAATAAAGTCAAGATGGAGGAAGCTAAGAGATGGAGAGAAGCTCTCACGGAAGTGGCCAATCTCTCTGGTTGGGATATTCGAAATAAGCCACAATATGCGCAGATAGAAGAAATTGTTCAAAACATAACAAATATTTTGGGTCCCAAAATTTCAAGTCTTCCAAAGGACGAACTAGTTGGGATAGAGTCTCGGGTTCAAGAATTAAAAGATCTTCTGTGTTGTGGATCACTTAATGATGTTCGAGTCGTTGGAATTAGTGGGATGGGTGGCATAGGAAAGACAAGTCTTGCTTGGACTTTATACGAAAGAATTTGTCATCAATATGACTTTCATTGTTTTATTGACGATGTAAGCAAAATTTATCGAGATTCTAGTTCGTTAGGTCTACAAAAACAGTTAATTTCACAGTCTCTAAACGAAAAAAATCTAGAGATTTGCAATGGTTTTGAAGGAACATGTTTGGTGTGGTCTAGGCTACACAATGCCAGGGCACTTATAGTTCTCGACAATGTTGATCAAGTTGAACAACTGAGGATGTTTACAGGGAATAGAGACACTTTGTTACGTGAATGCTTAGGTGAAGGGAGCAAAATCATCATAATTTCTAGGGATGAACATATATTAAGAACGCATGGAGTGGATGATGTTTATCAAGTGCAGCCGTTGAGTTGGGAAAATGCTGTCCAGTTATTCTGTAGAAATGCTTTGAAAGTTAATTATATTTTGAGCGATTACGAAAAGTTGGCCCGTGATGTACTATCACATGCTCAAGGACATCCTTTGGCTATTGAAGTAATTGGTTCATCTTTGTTTGGCCGAAGTGTGTCTCAATGGAAAAGTGCATTGGCTAGACTAAAAGAAAATAAAAGTAAAAGTATTATGGATGTTTTACGTATAAGTTTTGATGAGCTGGATGAAGGAGACAAAGAAACATTTTTGGATATTGCTTGCTTTTACAATGGATATGAAGAAATATACGTGAAGGAAATTCTAAGTTTCCGAGGATTTCATCCTGAATATGGCATGCAAGTTCTTGTTGATAAATCACTGATAACCAATAACTATGGGAGGATATATATGCATAGCTTGCTAATGGATTTGGGAAGGAGTATTGTTCGAGAAAAATCACCTAAGGAGCCCAGGAAGTGGAGCAGGTTGTGGGACTACCAAGATTTCCACAATGTTATGTCACACAATCAGGAAATTGACAATCTTGAAGCCATAGTTGTAAAAAATGAAGAATGGATGTTTGGTAAAACAACAATGAAGGCAGATGGTCTGTCGAACATTAGACAGCTTAAGTTGCTTAAACTTGAGAACGTGAACTTTTCAGGAAGTCTCAATCATCTTTCGAATGAACTAGGATATCTTACTTGGAACAAATATCCTTTTAAATGTTTGCCTCCAAGTTTTCGGCCCGAAAAACTAGTTGAGTTAAAACTGAGATGGAGCAGTATTCAACGACTGTGGGAAGGCACAAAGCTACTGCACAATTTGAAACGTTTGGATCTGTCTTACTCCAAAGATTTAATTGAGATGCCAGATGTTGGAGAGGCCCTAAATCTTGAAAGGGTAGATCTTGAAGGATGCATAAAGCTCCAAAAAATCAATCCATCGATCGGTCTTTTGAGAAGGCTTGCCATTTTGAATTTGAAAAATTGCAAAGAGCTAGTGAGCTTACCAAGGAGCATATTTGGCCTGAACTGTCTTGAATATCTAAGTATCTCTGGGTGTTCAAAACTTTATAACAATCAGTTATTTGATGAACCAAGGAATACAGAGTATTTGAAGAAGCTTTATTTAATTGAAGCTCCTATTAATCTCCGGTCAACACCCTCTTTCATAAAAGAAATGCTTTCGTGGCCTTCAGATTTGTTGTATTTGAGATCACAAAGAGACCCAGTTAGCTGTTTGTTGCCGTCCTCTCCCAGTCACCCTTGTTTGCGTGAACTCGATCTAAGCTTCTGTAACTTGGTTCAAATTCCTGATGCCATTGGAAAGCTACATTGCTTAGAGAAGCTAAATTTGAAGGGAAACAATTTTACTACACTTCCCAACCTCAAGGACCTTTTCAAACTGTATTATTTAAACTTACAGCATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACGAACACACTTGCCCTCAAAAGTGTACATGCTACCATTCCCATATTCACCTTCTATCCTTGGACGTTTAGTAGAGGACGATGAAGACAAGGCAGGATTAATCATCTTCAACTGCCCAGAATTAGTTGACAGGGAACGCTGCTCAAGCATGAGTATTTCATGGATGATACAAATTGTTCAGGCGAACCATCAATACGGGAGTCTTACATCCACCACAATTGGTCCAGATGTTGAAAGTATTATCCCTGGAAGTGAAATACCCCAGTGGTTCAACAATCAGTTTCGGAGCCGGTTAAATTTAATAGAGATTAAGTCCTCTAGCGTCGAAAATGACAATGATTGGATTGGTGTTGTGTGCTGTGTAATATTCGGTAGAGGCAACGAAATGGAAATGAGATATCCAAGACCATATTATCCAAGACCAGATAATCCCATTAAAAAACCTCCACTCGATTTGAGAAGAGATCCAACCATGGAGCTGTCAGATCACATGTGGCTATTTTATTTCTCCCGGAAGCAGTTCATTGAACAACGTGATTGGCTTGGCTTGAGATTTAGCATACCGGAGATGAAAAAATTCCGTTATGCTGTGTATGTCAAGAAATATGGGTATCGCTGGGTATATGAGCAAGATCTAATTCTGTGA 3270 0.3905 MFAFHFHNNSIQQFHNSLHSQQMPSNAIVQYSSSSSHVINTYDVFVSFRGEDTRNNFTGFLFQALRRKGIHAFKDDQDLKKGESIAPELLQAIQASRLFIIVFSNNYASSIWCLRELAEIRNCAQTSARRIIPIFYDVDPSVVRKQSGCYDVSFAEHEYRFRENKVKMEEAKRWREALTEVANLSGWDIRNKPQYAQIEEIVQNITNILGPKISSLPKDELVGIESRVQELKDLLCCGSLNDVRVVGISGMGGIGKTSLAWTLYERICHQYDFHCFIDDVSKIYRDSSSLGLQKQLISQSLNEKNLEICNGFEGTCLVWSRLHNARALIVLDNVDQVEQLRMFTGNRDTLLRECLGEGSKIIIISRDEHILRTHGVDDVYQVQPLSWENAVQLFCRNALKVNYILSDYEKLARDVLSHAQGHPLAIEVIGSSLFGRSVSQWKSALARLKENKSKSIMDVLRISFDELDEGDKETFLDIACFYNGYEEIYVKEILSFRGFHPEYGMQVLVDKSLITNNYGRIYMHSLLMDLGRSIVREKSPKEPRKWSRLWDYQDFHNVMSHNQEIDNLEAIVVKNEEWMFGKTTMKADGLSNIRQLKLLKLENVNFSGSLNHLSNELGYLTWNKYPFKCLPPSFRPEKLVELKLRWSSIQRLWEGTKLLHNLKRLDLSYSKDLIEMPDVGEALNLERVDLEGCIKLQKINPSIGLLRRLAILNLKNCKELVSLPRSIFGLNCLEYLSISGCSKLYNNQLFDEPRNTEYLKKLYLIEAPINLRSTPSFIKEMLSWPSDLLYLRSQRDPVSCLLPSSPSHPCLRELDLSFCNLVQIPDAIGKLHCLEKLNLKGNNFTTLPNLKDLFKLYYLNLQHCKRLKYLPDLPSRTHLPSKVYMLPFPYSPSILGRLVEDDEDKAGLIIFNCPELVDRERCSSMSISWMIQIVQANHQYGSLTSTTIGPDVESIIPGSEIPQWFNNQFRSRLNLIEIKSSSVENDNDWIGVVCCVIFGRGNEMEMRYPRPYYPRPDNPIKKPPLDLRRDPTMELSDHMWLFYFSRKQFIEQRDWLGLRFSIPEMKKFRYAVYVKKYGYRWVYEQDLIL 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01500 1089 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 187 IPR035897 -
Vian10g01500 1089 Gene3D Ribonuclease Inhibitor 786 885 IPR032675 -
Vian10g01500 1089 ProSiteProfiles Leucine-rich repeat profile. 833 854 IPR001611 GO:0005515
Vian10g01500 1089 ProSiteProfiles TIR domain profile. 40 209 IPR000157 GO:0007165
Vian10g01500 1089 Pfam NB-ARC domain 226 458 IPR002182 GO:0043531
Vian10g01500 1089 Gene3D - 39 211 IPR035897 -
Vian10g01500 1089 Pfam C-JID domain 956 1087 IPR045344 -
Vian10g01500 1089 FunFam Disease resistance protein (TIR-NBS-LRR class) 39 210 - -
Vian10g01500 1089 Gene3D - 212 378 IPR027417 -
Vian10g01500 1089 PRINTS Disease resistance protein signature 245 260 - -
Vian10g01500 1089 PRINTS Disease resistance protein signature 657 673 - -
Vian10g01500 1089 PRINTS Disease resistance protein signature 321 335 - -
Vian10g01500 1089 PRINTS Disease resistance protein signature 419 433 - -
Vian10g01500 1089 Gene3D Ribonuclease Inhibitor 583 766 IPR032675 -
Vian10g01500 1089 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 744 IPR044974 GO:0006952
Vian10g01500 1089 Pfam TIR domain 42 223 IPR000157 GO:0007165
Vian10g01500 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 478 IPR027417 -
Vian10g01500 1089 SMART till_3 41 184 IPR000157 GO:0007165
Vian10g01500 1089 Gene3D - 385 468 IPR042197 -
Vian10g01500 1089 SUPERFAMILY L domain-like 523 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01500 Vian-Chr10 25597120 25601189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01500 42 900 WRKY Transcription Factor Family AT4G12020 29.538 3.66e-85 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01500 - - pvu:PHAVU_010G055200g 1357.81