Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01496 ATGAACCACGACGACAAACTCACCATGGACCTGGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTCCTCGCGGGGTTTTACAGTAATGCCAAAAAGGGACAAGCATCGTCTTCATCTTCCTCACCAACCACATCCAACGAGTCAGTGTCCCCCAAAGCAGCATCATTCGTTGTGAAACCACCTGAGAAAAAGCACCGTCTCCCATCTGCATACAATCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCTAACCCTGAGATCCCACATCGAGAAGCTTTCAGCGCTGCTGCGAAAAATGTAATTATTTTTTTATTCTAA 345 0.4667 MNHDDKLTMDLVPPSEHLCYVRCNFCNTVLAGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNVIIFLF 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01496 114 PANTHER PROTEIN YABBY 6-RELATED 42 110 IPR006780 GO:0007275
Vian10g01496 114 Pfam YABBY protein 41 109 IPR006780 GO:0007275
Vian10g01496 114 SUPERFAMILY HMG-box 56 106 IPR036910 -
Vian10g01496 114 MobiDBLite consensus disorder prediction 39 71 - -
Vian10g01496 114 CDD HMG-box_SF 73 107 - -
Vian10g01496 114 Gene3D High mobility group box domain 57 108 IPR036910 -
Vian10g01496 114 MobiDBLite consensus disorder prediction 39 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01496 Vian-Chr10 25521701 25523322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01496 1 113 C2C2-YABBY Transcription Factor Family AT1G69180 42.038 5.07e-29 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vian10g01496 YABBY 4e-27 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01496 K25796 - gmx:100819079 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01496 10 25521701 25523322 Vian10g01496 10 25521701 25523322 ECH