Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01494 ATGGAATCTTGGAGTTATGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCGTTTATGAGAAGTCGAAGAACATTGGTTGAATGGGACAACAAATCCAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGCAGTTAAAAGCATGGAATTTGTGGACTTGGGTTTCCCTGACTTGTTGCAGAAGTCTTTTCATGGTAGCCAACCTCTAGAGACATCAAGCTATGAACTAAATAGTAATTCTAGTAGAAGAGGGAATTCCTCTACACAAGTCATTGCTTTGGATTCTACTATGGGGGAAGAAGAATCTGATTCAAAGCATTTAAGTTCTCTAGTTGAAGCGAAGACCCATGATTCTTCCCTGATTGATCTGAAGCTTGGGAGATTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGTTGCAAAAGAAGGGTTTACTTTGACATCCATAAATCCAACTACGCTTTCAAAGAGAGCTCGCACTTCCAGCTTATCTGCACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGCTCACTCCAAAACGGCCAAAGTTATTGTAAATGGCCTTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTGGCCGAGTTCGACGATGGCAAGCGCAGTTGCCGCAGGCGCCTAGCTGGACACAATGAACGCCGGAGGAAACCTCAATTTGATTACATGACTGGTAAACAGCACAAGATTCTTCACTCATATCAAGGTACCAAGTATCTTGGGTCCTCATTACAGAACAAACCCCAGTTTCCCTTTCAAAACATATTTCAAAGTGGCATCCTTTTCCATGGAAAACATGCTCAGAACTCTCAGAGTGGACGCATCAAACTGGAAGAAGATTCCTTGTACAGTTCCCAACTTGCTGCACCCGTCACACTTGGTCAGGAATTATCAAGCTGTGCTCTCTCTCTTCTGTCAGATCAGTCACAGTATCCATCACGCCATGCAGCAGGAAATCCATTAGCCGGTTCCCGAATCCTTCACGGCATTCACATTCAAGATAGAGATGACCTAGTTTCCCAGACATCTTTGAGGATAACAAGTTCTGCAGATAAATATGCAGCAAACGAGTCCTTTCCATGCAACACCGCCTCTAAGGATGTTATCAAGAATCAAACCGCACCATTCTCTAATGCAGTTCATGCTCTTCAAGACCATCATGGAGATGATATTTGCCAACCATCAGACCTGTTCGACATCAAACACCGTCTTTCCTCGGAACATGGAGCTACGGTTGATCTGTTCCAGTTGTCCTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAGGACTACTGTTTCCCAACTGTATGA 1443 0.4297 MESWSYVPEEKGYLFSDEMDFSLDAFMRSRRTLVEWDNKSNFERDGFNSDREAVKSMEFVDLGFPDLLQKSFHGSQPLETSSYELNSNSSRRGNSSTQVIALDSTMGEEESDSKHLSSLVEAKTHDSSLIDLKLGRLADCKGASSDKVAKEGFTLTSINPTTLSKRARTSSLSAQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGLEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILHSYQGTKYLGSSLQNKPQFPFQNIFQSGILFHGKHAQNSQSGRIKLEEDSLYSSQLAAPVTLGQELSSCALSLLSDQSQYPSRHAAGNPLAGSRILHGIHIQDRDDLVSQTSLRITSSADKYAANESFPCNTASKDVIKNQTAPFSNAVHALQDHHGDDICQPSDLFDIKHRLSSEHGATVDLFQLSSHLQRVEQQRNSVLVKWENEDYCFPTV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01494 480 FunFam Squamosa promoter-binding-like protein 14 170 240 - -
Vian10g01494 480 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Vian10g01494 480 Gene3D - 169 240 IPR036893 GO:0003677|GO:0005634
Vian10g01494 480 Pfam SBP domain 179 252 IPR004333 GO:0003677
Vian10g01494 480 SUPERFAMILY SBT domain 177 258 IPR036893 GO:0003677|GO:0005634
Vian10g01494 480 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 109 373 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01494 Vian-Chr10 25486449 25490654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01494 1 478 SBP-box Gene Family AT1G69170 37.247 1.00e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian10g01494 SBP 1.4e-31 No_clan