Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01493 ATGGTTATCATAATCGCCATCCTCATCGTCGTCGTCTTCCTCATGGGCTTCTTCTCCATCTACATCTGCCACTGCGCCCACTTCCCCTTCGCAAGCATCCGCAACCTCACCAGAGCCACCTCCCGCCCGCACCGTGGCCTCGACCAGGCGGTCATCGACACTTTCCCCACGTTGGAGTACTCCGTGGTGAACATCCACAAGCTTGGAAAGGGAACATTGGAGTGCGCAGTTTGCTTAAATAGGTTTGAGGACACTGAAACGATGCATTTGATCCCCAAGTGCGATCACATGTTTCACACGGAGTGCATCGACGAGGCGCGCACGACGGTGACAACTGAGTCTACGATGAGGCGGCAGAGGTGGCGGACGGAGTGGTCGACAACAAGAGGGAGATCTAAGATGCTTTGGTGCAGATCTGAGATGCTTTGGTGCAGATCTCAGCTTGGACAAAATAAACTCAACAACTTTTGGAGTCCCGGTTTCTCTTTGAAGTGCAGATTTGAGATGCTTTAG 513 0.5263 MVIIIAILIVVVFLMGFFSIYICHCAHFPFASIRNLTRATSRPHRGLDQAVIDTFPTLEYSVVNIHKLGKGTLECAVCLNRFEDTETMHLIPKCDHMFHTECIDEARTTVTTESTMRRQRWRTEWSTTRGRSKMLWCRSEMLWCRSQLGQNKLNNFWSPGFSLKCRFEML 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01493 170 SUPERFAMILY RING/U-box 68 111 - -
Vian10g01493 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 131 IPR013083 -
Vian10g01493 170 PANTHER RING FINGER DOMAIN-CONTAINING 4 106 - -
Vian10g01493 170 FunFam E3 ubiquitin-protein ligase ATL6 35 120 - -
Vian10g01493 170 Pfam RING-like zinc finger 74 103 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01493 Vian-Chr10 25459257 25459769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01493 1 104 Rapid Response to Elicitors AT3G05200 55.046 4.51e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01493 K10664 - gmx:100783688 164.851