Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01490 ATGGGTAGGGGAAAGGTCGAGCTGAAGAGGATTGAGAACAAGATAAACCGTCAAGTGACATTTGCAAAGAGGAGGAATGGGTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCCTAGCATGGCGAAGACACTGGAACGGTATCACAGATGCAGCTATGGAGCCTTGGAATTACACCACCAACCTGAAATAGAGACACAGAGGCGCTACCAAGAGTACCTGAAGCTAAAATCCAAAGTGGAGGCATTACAGCAAACACAAAGAAACCTGCTTGGTGAAGAATTGGAGCACTTAGATGTTAAGGAGCTTGAACAGCTTGAACGTCAGCTTGACTCTTCCCTCAAGCAGATCAGGTCAAACAAGACACAGCAGATGCTTGATCAACTCTCTGATTTGCATAGAAAGGAAGAGATGCTGCTGGAAACTAACAGTATCCTGAGGAACAAGTTGGAGGAAATCAATGTAGCCCTTCAACCAACATGGGAAACTAGGGAGCAAACTGCACCCTACGATGGCCACCCTCACCCATCAGAGGGATACTATGACACAGCACATTGCAACAGTACATTGAGAATCGGCTATGATTCTTCAGGGTTAAATGAAGCAGGAGGAGCTGCAGGAACCTCAGCCCAAAATGCTAGTGAGTTCATGCATGGATGGATGAACTGA 735 0.4694 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPSMAKTLERYHRCSYGALELHHQPEIETQRRYQEYLKLKSKVEALQQTQRNLLGEELEHLDVKELEQLERQLDSSLKQIRSNKTQQMLDQLSDLHRKEEMLLETNSILRNKLEEINVALQPTWETREQTAPYDGHPHPSEGYYDTAHCNSTLRIGYDSSGLNEAGGAAGTSAQNASEFMHGWMN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01490 244 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Vian10g01490 244 Coils Coil 122 145 - -
Vian10g01490 244 FunFam MADS-box transcription factor 1 13 93 - -
Vian10g01490 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Vian10g01490 244 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Vian10g01490 244 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian10g01490 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vian10g01490 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian10g01490 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian10g01490 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian10g01490 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian10g01490 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian10g01490 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian10g01490 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian10g01490 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01490 Vian-Chr10 25385652 25398831 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01490 1 215 MADS-box Gene Family AT5G15800 64.706 4.60e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian10g01490 K-box 1.5e-25 No_clan