Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01488 ATGGGAAGGGGTAGGGTACAGCTCAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAGAGGTGGCTTGCTCAAGAAAGCTCATGAGATCTCTGTACTCTGTGATGCTGAGGTTGCTTTGATTGTCTTCTCTCACAAAGGAAAGCTCTTTGAGTATGCCACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAGAGGTATGCCTATGCAGAGAGGCAGCTAGTGGCAAATGATTCTGAGACACAGTACACAATTGATTCTTGTTATACAATAGGCACACAGCACTATATGGGAGAAGATTTGGCTTCGATGAGCCTCAAAGAGCTTCAGAGTTTGGAGCAGCAGTTAGATACTTCTCTCAAAAACATCCGCAATAGGAGGAACGATCTCATGTACGAGTCTATTTCTGAGCTTCAGAAAAAGGAGAAAAGGATACAAGAGCAGAATAGCATCCTTGCAAAGAAGATCAAGGAGAAAGAGCAGGCTGTAGCACAACATGCTGTACAATGGGAACAGCCAAACTACAGGGTTGACACATCTTTCTTACCACAGCAGCAACCACTTCCAAGCTTGAACATAGGTGGCAATAATTTCAATCAAGATGCTGCACCAGAACTAGGAAGGAATGGTCTTGATCTGACCCTGGAACCACTGTATTCTTGCCACCTTGGATGCTTCTGA 699 0.4449 MGRGRVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLVANDSETQYTIDSCYTIGTQHYMGEDLASMSLKELQSLEQQLDTSLKNIRNRRNDLMYESISELQKKEKRIQEQNSILAKKIKEKEQAVAQHAVQWEQPNYRVDTSFLPQQQPLPSLNIGGNNFNQDAAPELGRNGLDLTLEPLYSCHLGCF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01488 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian10g01488 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian10g01488 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 156 - -
Vian10g01488 232 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Vian10g01488 232 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vian10g01488 232 FunFam Floral homeotic protein APETALA 1 13 68 - -
Vian10g01488 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian10g01488 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian10g01488 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian10g01488 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian10g01488 232 ProSiteProfiles K-box domain profile. 78 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian10g01488 232 Coils Coil 112 135 - -
Vian10g01488 232 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Vian10g01488 232 Coils Coil 141 168 - -
Vian10g01488 232 Pfam K-box region 99 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian10g01488 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01488 Vian-Chr10 25369416 25373108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01488 1 232 MADS-box Gene Family AT1G26310 56.420 2.89e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian10g01488 K-box 4.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01488 K09264 - gmx:100819745 395.201