Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01486 ATGCCACCTTTTGATGATGGACTTATAAATTTAAATTTCAATTTGACATGGTTTTTTCCCGTTGATTCTGGTTTCCTTTATCTGGTCAGGCTTCACTTCTGTGAAATTTATCAAGGTATAACAAAGATCAATCAGGTAGTTTTTACCGTATTTTTAAATAATCAAACAGCTGAAGAGCAAGTTGATATAATTGCTTTGGGTGGGGAGCCCGGAGTTGCTGTACACAGAGATTACGTAGTGATGGTTCCACACGTTAATGAGGGAAAGCAGGATTTGTGGCTTGATCTGCACCCATACAAGGATTCTAAACCCATGTACTACAATGCTTACTTGAATGGTGTGGAGATCTTTAAACTCAGCAATTTTGGTGATAAGAGTCTTGCAGGGCTCAACCCTTCCAAAAGCTTCTTGTCTGGGTCAGATGAAAAGGCTTCCCATGTTGCACATTTTAATAAAAGTTCGAAGAAACTCAAATTCGTCCTGATTGGATGTGGACTTCTTGCAGTGGTGCTGCCAGTTCTCCTTTGCTTACTCCTAATCAGGTTAAAGGTGATCAAGCTTAGAAGGGTCGTTTCACTGTGCGGTCTCACTGTCCACACACCTAATCGAATTGAAAAAGCAAAAAAGTGGTCACTTTGCACTCAATTTTCAATGCGAGATATAAAATTGGCGACAAATGACTTCCATGAGGATTTACTTATAGGCACTGGTGGATTTGGCAGTGTTTACAAGGGTAGCTTCACCGATGGTGCAACTTACGTGGCTGTTAAACGTGCCAATCCAATGTCAGAGCAAGGTATTTCAGAATTTGAGGCAGAGATCCTTTTGCTCTCACAGCTTAAGCATCATAACCTGGTATCCCTTTTGGGTTATTGCAATGAGGATGGGGAGATGATATTGGTGTATGACTTCATGGCCAATGGAAGTCTGCACGATCATCTTCATCTGAGGCAGAGAGATGGATCCCCTTTGGATTGGATTCAACGTCTTGAGATATGCATGGGAATTGCAAGGGGTTTGCACTACCTTCACACTGGCACAAAGGACAGGATCATTCACCGCGACATCAAGACAACCAACATACTCTTAGATCACAACTGGGTGCCCAAAATTTCAGATTTTGGGTTGTCAAAGGCAGGTTTCCCTTCCTTTGTCACTACCAACGTGAAGGGTAGCATTGGTTACTTAGATCCCGAATGCTATGAAAGCCACAAGTTGACTGAGAAATCTGATATATACTCACTTGGGGTGGTGTTATTAGAGGTTCTGAGTGCAAGACCTGCTGTAAGTGTAGGTGAAGATGATGAGCATATTAACTTGGCTGAATGGACTGTGTCGTGCCTTGAGAATGGAAATGTGGAGGAAATAGTTGATCCCAACTTGAAAGAAAACATAATTAAGGAGTGCTTTGAGTTATATTTAGGAGTTGCAATGAAATGTTTGGCTGAAAGAGGAACGGAAAGGCCATCCATTGGTGAAGTGCTAGAGAGCCTTGTTCTGGCAATGCATCTTCAGAAAAATGAAGGCAGTGTCCCAAATGGAAATCATAATGCTGCTCTGCAGGGTAATTCAGATTTGACACCTGGGGTTGAGTTCTCTGAAATCATGACGCCTATTGGTCGGTGA 1626 0.4219 MPPFDDGLINLNFNLTWFFPVDSGFLYLVRLHFCEIYQGITKINQVVFTVFLNNQTAEEQVDIIALGGEPGVAVHRDYVVMVPHVNEGKQDLWLDLHPYKDSKPMYYNAYLNGVEIFKLSNFGDKSLAGLNPSKSFLSGSDEKASHVAHFNKSSKKLKFVLIGCGLLAVVLPVLLCLLLIRLKVIKLRRVVSLCGLTVHTPNRIEKAKKWSLCTQFSMRDIKLATNDFHEDLLIGTGGFGSVYKGSFTDGATYVAVKRANPMSEQGISEFEAEILLLSQLKHHNLVSLLGYCNEDGEMILVYDFMANGSLHDHLHLRQRDGSPLDWIQRLEICMGIARGLHYLHTGTKDRIIHRDIKTTNILLDHNWVPKISDFGLSKAGFPSFVTTNVKGSIGYLDPECYESHKLTEKSDIYSLGVVLLEVLSARPAVSVGEDDEHINLAEWTVSCLENGNVEEIVDPNLKENIIKECFELYLGVAMKCLAERGTERPSIGEVLESLVLAMHLQKNEGSVPNGNHNAALQGNSDLTPGVEFSEIMTPIGR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01486 541 FunFam FERONIA receptor-like kinase 4 120 - -
Vian10g01486 541 Pfam Protein kinase domain 229 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01486 541 ProSiteProfiles Protein kinase domain profile. 228 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01486 541 Gene3D Phosphorylase Kinase; domain 1 187 304 - -
Vian10g01486 541 CDD STKc_IRAK 234 498 - -
Vian10g01486 541 Pfam Malectin-like domain 12 118 IPR024788 -
Vian10g01486 541 FunFam receptor-like protein kinase FERONIA 189 304 - -
Vian10g01486 541 Gene3D Transferase(Phosphotransferase) domain 1 305 519 - -
Vian10g01486 541 PANTHER OS07G0166700 PROTEIN 213 505 IPR045272 GO:0004714|GO:0006468
Vian10g01486 541 SMART serkin_6 228 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01486 541 SUPERFAMILY Protein kinase-like (PK-like) 213 501 IPR011009 -
Vian10g01486 541 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 305 506 - -
Vian10g01486 541 Gene3D - 6 120 - -
Vian10g01486 541 ProSitePatterns Protein kinases ATP-binding region signature. 234 257 IPR017441 GO:0005524
Vian10g01486 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 351 363 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01486 Vian-Chr10 25348624 25350249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01486 9 541 Receptor kinase-like Gene Family AT3G51550 45.455 3.99e-163 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vian10g01486 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01486 - - gmx:100776859 851.662