Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01466 ATGGGAAGATCTCCATGCTGTGATGAAAGTGGTTTGAAGAAGGGTCCTTGGACACCTGAGGAAGATCAGAAGCTTGTTAACCACATTCAAAAATATGGTCATGCAAGCTGGAGGGCACTTCCAAAACTTGCAGGACTCAACAGGTGTGGCAAAAGTTGCAGGTTAAGGTGGACTAACTACTTGAGACCTGACATTAAAAGAGGAAAATTTTCCAAAGAAGAAGAACAAACAATTCTTGATCTCCATGCCATCCTTGGAAACAAATGGTCCGCAATAGCAAGTCACATACCTGGTAGGACAGATAATGAAATCAAGAATTTTTGGAACACTCATCTGAAGAAGAAGCTGATTCAAATGGGTTATGATCCAATGACACACCAGCCTCGAACTGATGATATTCTCACAGGCTTGTCTCATCTCATAGTACTGGCTAACCTGAAAGAACTTTTGGATCAGCACCATCAATCATGGGAACAAAGCCTTGCAAGGCTTCAAGAAGAGGCCATCCAATTGACCAACCTCCAAAGCTTACAACAACACCTCGTGCAGCCACAATTCACTGAGGCAGATCTTAACACAGTTAGTAGTATGACAAACAGTACCTTCATGATGAACAACGACATCGTCAATGTTTCAAATGATACCAGTGTGTCACCATCTAATGGAATTGGCACTGTCCAATTGGCTAATGATTCCACCCCTTTCTCTCACATGCCTGAATTGAAAACACCATCTTCTTGTTCTCCGTGGCTTTTCTCTTGTTCAAGCACTACCCCTTCTCCTTCTACCCATGTTGTTCCACCGGTGACGTCAGAGGTTTCATTGACTAATGTGGACGACAATTGCACCATTTGGCCAGAGATCCTGCTAGAGGACCCTTTCTTCAAAATGATTTCCTAG 900 0.4311 MGRSPCCDESGLKKGPWTPEEDQKLVNHIQKYGHASWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSKEEEQTILDLHAILGNKWSAIASHIPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDDILTGLSHLIVLANLKELLDQHHQSWEQSLARLQEEAIQLTNLQSLQQHLVQPQFTEADLNTVSSMTNSTFMMNNDIVNVSNDTSVSPSNGIGTVQLANDSTPFSHMPELKTPSSCSPWLFSCSSTTPSPSTHVVPPVTSEVSLTNVDDNCTIWPEILLEDPFFKMIS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01466 299 FunFam Transcription factor MYB39 69 130 - -
Vian10g01466 299 CDD SANT 69 112 IPR001005 -
Vian10g01466 299 CDD SANT 16 61 IPR001005 -
Vian10g01466 299 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vian10g01466 299 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian10g01466 299 Gene3D - 69 116 - -
Vian10g01466 299 Coils Coil 147 174 - -
Vian10g01466 299 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vian10g01466 299 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian10g01466 299 SMART sant 13 63 IPR001005 -
Vian10g01466 299 SMART sant 66 114 IPR001005 -
Vian10g01466 299 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian10g01466 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian10g01466 299 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 230 - -
Vian10g01466 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian10g01466 299 FunFam MYB-related transcription factor 13 66 - -
Vian10g01466 299 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01466 Vian-Chr10 24950287 24951399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01466 1 179 MYB Transcription Factor Family AT1G34670 75.978 3.77e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian10g01466 Myb_DNA-binding 7.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01466 K09422 - gmx:100785374 427.943