Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01463 ATGTCTTCCAATAAGAACATGGGAAAAACTGTCGGCGCAAAAACGGCAAGAGCATGTGATGGCTGCATAAGAAATCGAGCGCGTTGGTACTGTGCGGCCGACGACGCGTTCCTATGCCAAGCTTGTGACTCTTCCGTTCACTCAGCGAACCCATTAGCGCGTAGACACCACCGCGTTCGCTTGAAAATCATTTCGCACATTAACTCCGGCAATGACTTATCTTCTGGAATGAGTAATATTCGTGTTCCATCGTGGCACAAAGGGTTCACCAAGAAACCCCGAACACCACGTCACGGGAGGCACACTAATAAGGGTGTCAAGAGCCCCTTCAATGTGGTACCGGAAGTGTGTCCCCAAGACACAATTTCGAATTCACGTGAAGAGAGCACAGATCAGCTTCTTTACAGAGTACCCGCAACTCCTTCATCTGAACAAGGGGTATCCATGACCGATGAGAGGAAAGTTGTTTTTTTAGGATGTGAAAGCGCTATTGAGATTGCGGAGTTTAGTGCCGATGTTGAGAGTTTGTTGGGGAAGGGACTAGAGAGTGAGTTTGTGGGAATGGAAGAGTTGGGGCTGGTGGGTGCCAAGGAGGTGGAGGAGCATGTGAAGGTGGAGGAGGAGGCGCTTGAATTGGATAAGAACCAGCAAGTACTTAAAGAAAATTATCAGCTGAAGAAGAAGATACTATTGTTGCAGTTGGATTACGAGGCTGTAATCAGTGCTTGGACGACCCAAAAATCACCATGGACAACTGGTGCTAAACCAAACTTGGGCACTCAGCAGTTTTTTTGGCCTCATTTCATGGGAACATGTGGTGTCGAGTTTTGCCATCTTCGTGGGGAATTGGGTGAATTATCTGGGTGTCATTCAACAATGGGAGACGATGGAAGAGAAGCAAGAGTATTGAGATATAGAGAAAAGCGACGTAAAAGGTTATTCTCGAAAAAAGTAAGGTATGAGGTTCGAAAGATGAATGCGGAGAAAAGACCCAGAATGAAAGGGAGGTTTGTAAAGAGATCTTGCATAGCGACACCACCCACTGTTCCCTTGTTAAACAGAAAATAA 1068 0.4635 MSSNKNMGKTVGAKTARACDGCIRNRARWYCAADDAFLCQACDSSVHSANPLARRHHRVRLKIISHINSGNDLSSGMSNIRVPSWHKGFTKKPRTPRHGRHTNKGVKSPFNVVPEVCPQDTISNSREESTDQLLYRVPATPSSEQGVSMTDERKVVFLGCESAIEIAEFSADVESLLGKGLESEFVGMEELGLVGAKEVEEHVKVEEEALELDKNQQVLKENYQLKKKILLLQLDYEAVISAWTTQKSPWTTGAKPNLGTQQFFWPHFMGTCGVEFCHLRGELGELSGCHSTMGDDGREARVLRYREKRRKRLFSKKVRYEVRKMNAEKRPRMKGRFVKRSCIATPPTVPLLNRK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01463 355 MobiDBLite consensus disorder prediction 86 110 - -
Vian10g01463 355 Coils Coil 196 216 - -
Vian10g01463 355 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Vian10g01463 355 ProSiteProfiles CCT domain profile. 298 340 IPR010402 GO:0005515
Vian10g01463 355 CDD Bbox1_BBX-like 18 61 - -
Vian10g01463 355 SMART bboxneu5 14 61 IPR000315 GO:0008270
Vian10g01463 355 MobiDBLite consensus disorder prediction 87 104 - -
Vian10g01463 355 Pfam CCT motif 298 340 IPR010402 GO:0005515
Vian10g01463 355 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 341 - -
Vian10g01463 355 Pfam B-box zinc finger 17 58 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01463 Vian-Chr10 24918512 24919789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01463 5 340 C2C2-CO-like Transcription Factor Family AT1G25440 41.990 5.15e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vian10g01463 CCT 1.3e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01463 - - vun:114173052 554.673