Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01456 ATGCTGGAGGCTCTTAATCAATCGGCTAAAATGATGAAGAAATTGAAGCAGAAGCGAAATCCATTTCATGACTCCAAAATGACAAGGAAACTGCGCATCATTTGCGATGATCCTGATGCCACCGACTCATCATCGGATGAAGAGGAGCATTTTGGGAACGGTAGGAAGGTGAAGAGAACTATGGTTGAGATTGCTCTTCCACCAGTTCCAGTTAACTCTCTCGTTGCAGCTGAAACTAGCACCGAGAGTTCCAACAATGAGGAACTGAACAAGAAGAGGGTTTTGGCCAAAAATCCCTCTGTGAAGAGACAAACTTGTGGCAAATACAAAGGTGTTCGGATGAGGAAATGGGGCAAATGGGCTGCAGAAATTCGCGATCCTTTCAAGGGTGCGCGTGTCTGGTTGGGCACTTACAACACTGCAGAAGAGGCTTCTCAGGCCTATGAGACCAAAAGGCTTGAATTTGAAGCCATGGCCAAGGCTTTGTCTGATGGGAGGAGCAACAACAACAACAACACTGGCACCAACAACAACAATAATAACCACGTTGTTGCATCTGTTGTAACTGTGGGAGCCTCAGAAAAGAAGAACTCCAACTACTGTGTTTCTTCTGCTGCAGAATCTGCAACAGACTCCAAGTCTGCTACTATCGACTACTCAGAGAGTAGTATCCTGTCACACACATCTCCATATTCCGTGCTTGAGTTGGATACCTCTGCTTCCAATTTGACTGTGAGTGGTAAGGTTTCAGGCAATGAAGTTGTTGAGACTAAAGGTTTGGAGACTGAAGTTGCTGAGATTGAGACGGAAGGTTTAAAAGCTGAAAGTTTTGAAGCTGAATTTGCTGAGCTAGATATTCCTGATTTGAGTATGCTGAGTGTGCCACACCCATCTGCTGTTGCTTCCAATGCTGCCAATGTTGGTGCTCCATCTCAGTTTGAATTTGATTGGTTTGCATTAGACAGTCTGGAGCATGGATTTGATGAAGAGCTTGGGTTTGATGATGATCTTGCTGCCTTGGAAGACATTCAGATATATGGCTTTGATGACGGTCAGCCTAGTGAGCTTCCTGATTACGATTTTGATGACATTGGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCGTATAA 1149 0.4465 MLEALNQSAKMMKKLKQKRNPFHDSKMTRKLRIICDDPDATDSSSDEEEHFGNGRKVKRTMVEIALPPVPVNSLVAAETSTESSNNEELNKKRVLAKNPSVKRQTCGKYKGVRMRKWGKWAAEIRDPFKGARVWLGTYNTAEEASQAYETKRLEFEAMAKALSDGRSNNNNNTGTNNNNNNHVVASVVTVGASEKKNSNYCVSSAAESATDSKSATIDYSESSILSHTSPYSVLELDTSASNLTVSGKVSGNEVVETKGLETEVAEIETEGLKAESFEAEFAELDIPDLSMLSVPHPSAVASNAANVGAPSQFEFDWFALDSLEHGFDEELGFDDDLAALEDIQIYGFDDGQPSELPDYDFDDIGADEFAGWIEEPLNIPCV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01456 382 ProSiteProfiles AP2/ERF domain profile. 108 170 IPR001471 GO:0003700|GO:0006355
Vian10g01456 382 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 230 - -
Vian10g01456 382 Gene3D AP2/ERF domain 107 163 IPR036955 GO:0003700|GO:0006355
Vian10g01456 382 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Vian10g01456 382 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Vian10g01456 382 SUPERFAMILY DNA-binding domain 108 155 IPR016177 GO:0003677
Vian10g01456 382 CDD AP2 108 148 IPR001471 GO:0003700|GO:0006355
Vian10g01456 382 SMART rav1_2 108 176 IPR001471 GO:0003700|GO:0006355
Vian10g01456 382 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01456 Vian-Chr10 24866189 24867337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01456 14 381 AP2-EREBP Transcription Factor Family AT1G68550 33.858 2.19e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian10g01456 AP2 6.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01456 - - var:108335041 695.271