Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01448 ATGTCGGCAGCGTCGCCGTCAGCGGCGGCATCTCCACCACCACAAACACCACCCTCCTCCAACACTAGTCCCTCACCGTCCAACGCCACCACTCCTCCGCTGCAACAAACCCCTTCTTCCACTTCTCCGCCACAACAAGCAGAATCTCCGCCTCCGCTAACCCCATCTCCGGCGGCTCCGCCGCCTGCTCCGCCGTCACCACCACCTAGTTCTTCACCTCCCCCAGTGTCTGGAACACCTCCTCCATCAGTCACTCCATCATCACCACCTCCATCTTCGCCGCAGCCATCTCCTCCATCAGTCACTCCATCATCACCACCTCCATCTTCGCCGCAGCCATCTCCTCCACCGCCACCCCCTCAATCAGTCCCTCCATCATCATCACCGCCATCTTCACCGCAGCCATCTCCTCCACCGCCGCCTGCTCCTGATGCACCGGCACCGGTGCCACCGAGCTCTCCACCGCCACCACCACCATCAGCACCAGTGCCATCAAGAAGCCCTCCGCCACCGCCACCACCATCAAACCCTCCTAATAGCTCATCTCCACTACCACCGCCACAACCCTCACCATCAGCTCCCCCACCTAACAACATCCAAACACCGCCGCCGCACCGAAATTCACCATCTCCTCCGGCTTCACCGCCCCCTAGAAACTCAACTAGGTCATCACCGCCCCCTCCGGCAGCGAGGTCATCGCCGCCTCCAGCACCTGAGCCATCCAACCCACCTTCTAGGAGTAGTCCTCCTCCCACACCAAGTTCCTCCCTAGCTCCCCCTTCAAATTCTACGCCAAGTTCATCACCACCTTTAGTTACTCAATTGGCCCCGCCACCGCCATCCCCGTCAAAAGTTTCATCGCCCCCATCCCCTACTCCGAACCCGACAGCAGAGGCAGGCTCTCCTGGAGGTAGTATCAGCACTGTTGGTGTAGTGGCTATTGGTGTGGTAGCTGGATTTCTGCTTCTTGGCTTCATTGGTGTTCTTATATGGTGCATGAGAAGGCAAAAGAGAAAGACTCCTGTGAATGGTGGTTATGTCATGCCATCCACTCTTGCCTCCTCTCCTGAATCAGATTCATCGTTTTTTAAGACACACTCTTCAGCTCCTCTTGTGCAAAGTGGCTCTGGCAGTGATGTTGTGTACACACCATCTGATCCTGGTGGACTAGGCCACTCAAGGTCATGGTTTTCATATGAAGAACTGATGAAGGCCACAAATGGTTTCTCAAGTCAAAATCTTTTGGGTGAGGGAGGATTTGGTTGTGTGTATAAAGGGCACCTTCCTGATGGAAGAGAGATAGCAGTGAAACAACTGAAGATTGGTGGAGGTCAGGGAGAGAGAGAATTCAAAGCTGAAGTGGAAATTATCAGTCGTATACATCATCGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGACAGCAGAAGACTACTTGTCTATGACTACGTTCCTAACAATAACCTTTACTTCCATCTACATGGGGAAAACCAGCCTGTGCTAGAATGGACAAACCGTGTCAAAATTGCAGCTGGTGCAGCCCGTGGACTAGCTTATCTCCATGAAGACTGCAACCCTCGGATCATTCACAGGGATATCAAGTCGTCAAACATTCTTTTAGATTTCAATTATGAAGCTAAGGTCTCAGATTTTGGGCTAGCCAAATTAGCTCTTGATGCAAATACGCATATTACCACGCGTGTCATGGGAACTTTTGGACTATTAAGAGCAAAATGCTGTATTAACATTGATTTCCACCCTCATGTAAGGTATGTTGCCCCTGAATATGCTTCAAGTGGTAAATTGACTGAGAAGTCTGATGTATATTCTTTTGGAGTCGTGCTTTTGGAGCTAATTACCGGCCGGAAGCCGGTAGATGTATCCCAACCTTTGGGAGATGAAAGCCTGGTTGAATGGCTGAAGAAAGATGAAGAACTAATGTCACTAGAAATTGCAGTTCTACCTGTGAAAAAGAACATTTCGGTTGACATGGTCGAAGCTCGGCCTTTACTAAGTCATTCAATTGATACTGAGGAATTCAGTAGTTTGGCAGATCCAAGGCTAGAAAAGAATTACATTGAGAGTGAATTGTATTGCATGATTGAGGTTGCTGCAGCGTGTGTGCGGCATTCAGCTTCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGGAGGTTCTGATCTAACTAATGGAATGAAACTTGGGGAAAGTGAGGTGTTTGACTCTGCACAACAATCTGAAGAAATAAGATTATTTCGGAGAATGGCATTTGGTAGTCAAAATTATAGCACAGATTTCTTTAGCCGTGCTAGTTTGAATCCATGA 2343 0.4968 MSAASPSAAASPPPQTPPSSNTSPSPSNATTPPLQQTPSSTSPPQQAESPPPLTPSPAAPPPAPPSPPPSSSPPPVSGTPPPSVTPSSPPPSSPQPSPPSVTPSSPPPSSPQPSPPPPPPQSVPPSSSPPSSPQPSPPPPPAPDAPAPVPPSSPPPPPPSAPVPSRSPPPPPPPSNPPNSSSPLPPPQPSPSAPPPNNIQTPPPHRNSPSPPASPPPRNSTRSSPPPPAARSSPPPAPEPSNPPSRSSPPPTPSSSLAPPSNSTPSSSPPLVTQLAPPPPSPSKVSSPPSPTPNPTAEAGSPGGSISTVGVVAIGVVAGFLLLGFIGVLIWCMRRQKRKTPVNGGYVMPSTLASSPESDSSFFKTHSSAPLVQSGSGSDVVYTPSDPGGLGHSRSWFSYEELMKATNGFSSQNLLGEGGFGCVYKGHLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIEDSRRLLVYDYVPNNNLYFHLHGENQPVLEWTNRVKIAAGAARGLAYLHEDCNPRIIHRDIKSSNILLDFNYEAKVSDFGLAKLALDANTHITTRVMGTFGLLRAKCCINIDFHPHVRYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDVSQPLGDESLVEWLKKDEELMSLEIAVLPVKKNISVDMVEARPLLSHSIDTEEFSSLADPRLEKNYIESELYCMIEVAAACVRHSASKRPRMGQVVRAFDSLGGSDLTNGMKLGESEVFDSAQQSEEIRLFRRMAFGSQNYSTDFFSRASLNP 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01448 780 SUPERFAMILY Protein kinase-like (PK-like) 391 724 IPR011009 -
Vian10g01448 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Vian10g01448 780 FunFam Putative receptor-like serine/threonine-protein kinase 485 668 - -
Vian10g01448 780 MobiDBLite consensus disorder prediction 44 296 - -
Vian10g01448 780 Gene3D Phosphorylase Kinase; domain 1 389 484 - -
Vian10g01448 780 MobiDBLite consensus disorder prediction 22 43 - -
Vian10g01448 780 MobiDBLite consensus disorder prediction 1 302 - -
Vian10g01448 780 ProSiteProfiles Protein kinase domain profile. 409 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01448 780 ProSitePatterns Protein kinases ATP-binding region signature. 415 437 IPR017441 GO:0005524
Vian10g01448 780 Gene3D Transferase(Phosphotransferase) domain 1 485 735 - -
Vian10g01448 780 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 321 761 IPR047117 -
Vian10g01448 780 Pfam Protein tyrosine and serine/threonine kinase 412 646 IPR001245 GO:0004672|GO:0006468
Vian10g01448 780 SMART serkin_6 409 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01448 780 FunFam Proline-rich receptor-like protein kinase PERK8 382 484 - -
Vian10g01448 780 CDD STKc_IRAK 415 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01448 Vian-Chr10 24745852 24749289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01448 115 772 Trihelix Transcription Factor Family AT1G70460 43.623 1.02e-153 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vian10g01448 PK_Tyr_Ser-Thr 2.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01448 - - vun:114173712 815.453