Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01436 ATGGCCAGCAGCAAGTGTTGCATGATCTCTTCACAACAAAACCAGAATGCCCCCACATGTTACCCTTTTCCATCTTCTCCTTCAATGGGAATGGTCTGTGCAGACATGATGGGGTCTCTCTCTCTTGCTACTGTTTCAAATGCTCTTTCATCTCAAGAAAGCTTTGGTTATGGCCATCATCATGGTCATGCTTCTGGGCTGGAAAATGGAAGGAGCACAAGCTGGAGTTTTCCCTTCATGAGGGAGTTCCTCTCCTCAAACTTTGAAGACTGTAGTGATGTTGGGGCTGGGGAGAGTAACAGTAATGAGAAAACAAACAACAATGGCAAGTTTAGTGAAGAAAGTAACCCTAACGAGAACCTTCTCAGTGGCAAAGAGGTAGATAGTGGACACTCTAAACTTTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAGCTCGTGGCTCTTTATGGCCCTCAGAATTGGAACCTCATAGCTGAAAAGCTAGAAGGAAGATCAGGGAAGAGCTGTAGGCTGAGGTGGTTCAACCAGTTAGATCCAAGGATCAATAGAAGAGCTTTCAGTGAAGAGGAGGAAGAGAGGCTAATGCAGGCACATAGAATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGGAAGTACAGGGAACAGTCCAGTGCCTACAGGAGGAGGAGAATGAGTCAATCTGTTTACAAAAGGGTGGAGCAAAATCCAACCTTTTGCAGCAGGGACAATGCCTCAACCACGGAACAAGAACCATCGCCTTCTTATTGTCTCAATCTCCTCCACAACGGAGTAGGAGTCACAAATAACCTGGCTAGTTTCCCATCCTTCCATGGAGTAGGTTCTGGTGAGGTTGTTGATTTTGGCTTAAATGCTTCTCTACAAAACATGAATGGTGTGAGAGAAGCAATGTCAAACACCCTACAAGTTGGCTTGCGTGCTCAAGCTCAACAAGCACCATTTGATTTCTTCTCCGGTGGTGGAAGCAATGACATGACGGGAGAGTCTAACGGGCAGATCAGAAGCTGGGAGAGGAGCAATGAATCTGTTCAATCTGGTTTATACCCTCATTATCCCCAACAATATTTGAGGGCAATGCAACAGCTAGAGAACAACACACGCAACAATTTTTACAGTTTCTTGAATTCCTCATCGGCATCAGCAAGCACAGGGAAGGAAGCATCATCATCATCAGCATGTGTTGCAGGAATGAGAGATAAAGTGGTGAATAGTGACCCCCCAGATGGTGTTCCACCCCCATTTTTTGACTTCCTTGGAGTAGGAGCCACATGA 1368 0.4591 MASSKCCMISSQQNQNAPTCYPFPSSPSMGMVCADMMGSLSLATVSNALSSQESFGYGHHHGHASGLENGRSTSWSFPFMREFLSSNFEDCSDVGAGESNSNEKTNNNGKFSEESNPNENLLSGKEVDSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMSQSVYKRVEQNPTFCSRDNASTTEQEPSPSYCLNLLHNGVGVTNNLASFPSFHGVGSGEVVDFGLNASLQNMNGVREAMSNTLQVGLRAQAQQAPFDFFSGGGSNDMTGESNGQIRSWERSNESVQSGLYPHYPQQYLRAMQQLENNTRNNFYSFLNSSSASASTGKEASSSSACVAGMRDKVVNSDPPDGVPPPFFDFLGVGAT 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01436 455 Gene3D - 190 261 - -
Vian10g01436 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 238 IPR017930 -
Vian10g01436 455 ProSiteProfiles Myb-like domain profile. 137 183 IPR001005 -
Vian10g01436 455 FunFam MYB transcription factor 190 260 - -
Vian10g01436 455 MobiDBLite consensus disorder prediction 94 125 - -
Vian10g01436 455 PANTHER MYB PROTEIN-RELATED 137 280 - -
Vian10g01436 455 CDD SANT 140 181 IPR001005 -
Vian10g01436 455 FunFam MYB transcription factor 137 188 - -
Vian10g01436 455 SMART sant 188 236 IPR001005 -
Vian10g01436 455 SMART sant 136 185 IPR001005 -
Vian10g01436 455 CDD SANT 191 231 IPR001005 -
Vian10g01436 455 Gene3D - 137 188 - -
Vian10g01436 455 ProSiteProfiles Myb-like domain profile. 184 234 IPR001005 -
Vian10g01436 455 MobiDBLite consensus disorder prediction 94 127 - -
Vian10g01436 455 Pfam Myb-like DNA-binding domain 189 232 IPR001005 -
Vian10g01436 455 Pfam Myb-like DNA-binding domain 137 183 IPR001005 -
Vian10g01436 455 SUPERFAMILY Homeodomain-like 137 230 IPR009057 -
Vian10g01436 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 183 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01436 Vian-Chr10 24532129 24533969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01436 130 262 MYB Transcription Factor Family AT1G69560 81.481 8.37e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian10g01436 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01436 K09422 - gmx:100776292 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01436 10 24532129 24533969 Vian10g01436 10 24532129 24533969 ECH