Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01433 ATGGATCTACAAAACATGCAAAATCAGAGCATGCATTTTGTGTTGTCCACTGATGCCAAACCAAGGCTAAAGTGGACTCCTGAACTTCACCAACGGTTCATTGAGGCCACAAATCAGCTTGGAGGTGCAGATAAAGCAACTCCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGACTTACTTTGTACCACCTGAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACAACTAGATACCAGCTCTGACAGCAAACAAGAAGATTACATAGAAACCAAGAGCAGTGATGGCCATTGCAGCAGGGAAATCAGTCTTGGGGCCCAGAATCAAATTACTGAAAACATGCAGATAGCTCAGGCCCTCCAAATGCAAATGGAAGTACAAAGGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTGAAGCTCCGAATTGAAGCTCAAGGGAAATACTTGCAATCAGTGCTAAAGAAGGCACAGGAAGCACTTGCTGGATACAATTCTGCCCCAGTGGGGATAGAGCTCACAAAAGCTGAACTTTCCCAGCTTGTCACCATCATCAACAATGCTTGTCCAAGCTCTCCCATCTCAGAACTAACAGAGACAAGAGGGTTGAGTTTAAGCTGTGGGGACAGGAAAAGAGACAGAGGCACTATGTGTTCACTGGAAAGTTCCTTAACATCTTCTGAAAGCTCTGGGAGAAAGGAAGAGAAACAGTCAATGGAAGAGATAGAGGAGTTCAAAAGCTCCAATAATGCTTCAGTTGAATTGCCGTTGATGGGCTTTCACACTGAGAATAAAGCATCCAACACAGGCTCTAGCAATGAGGCTAGTGGGAGAAAGAGAAGTGCAGCAACAAAATCTAATGATGGTAAGTGTGTTGTTGAACAACCATGTGGAAAAAGAAGTGGCAACAAGTTCAGAAAACCAGAAATGCTTGACTTGAACAGCCAATGCCAGATTGACATCGACTCAACAACTTCAAAAACATTAGACTTAAATTGCAGCTTAAACTTTTGGGAACCATGA 1035 0.429 MDLQNMQNQSMHFVLSTDAKPRLKWTPELHQRFIEATNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLDTSSDSKQEDYIETKSSDGHCSREISLGAQNQITENMQIAQALQMQMEVQRKLYEQIEVQKHLKLRIEAQGKYLQSVLKKAQEALAGYNSAPVGIELTKAELSQLVTIINNACPSSPISELTETRGLSLSCGDRKRDRGTMCSLESSLTSSESSGRKEEKQSMEEIEEFKSSNNASVELPLMGFHTENKASNTGSSNEASGRKRSAATKSNDGKCVVEQPCGKRSGNKFRKPEMLDLNSQCQIDIDSTTSKTLDLNCSLNFWEP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01433 344 MobiDBLite consensus disorder prediction 232 247 - -
Vian10g01433 344 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Vian10g01433 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 267 IPR044848 GO:0003700
Vian10g01433 344 FunFam Myb family transcription factor 19 77 - -
Vian10g01433 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Vian10g01433 344 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Vian10g01433 344 MobiDBLite consensus disorder prediction 266 295 - -
Vian10g01433 344 Gene3D - 19 77 - -
Vian10g01433 344 Coils Coil 120 140 - -
Vian10g01433 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Vian10g01433 344 Pfam MYB-CC type transfactor, LHEQLE motif 117 163 IPR025756 -
Vian10g01433 344 MobiDBLite consensus disorder prediction 266 286 - -
Vian10g01433 344 MobiDBLite consensus disorder prediction 219 252 - -
Vian10g01433 344 MobiDBLite consensus disorder prediction 76 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01433 Vian-Chr10 24462660 24464351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01433 11 305 G2-like Transcription Factor Family AT1G69580 49.837 1.91e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian10g01433 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01433 - - gmx:100787178 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01433 10 24462660 24464351 Vian10g01433 10 24462660 24464351 ECH