Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01422 ATGTTGAATGTTGACGTGAATGGGAACAACAAAAGGAAGAGGTGTGGGAGGGTTTTCAGGTTCAAGAACTTTGCTGAACCTGGTTACCCTGTCATCTTTGGTGGCCCATTTTGTCAGAATGTGAATGCATTGCTTCAATATGCAAATTTTGAGACTCATTTAAGCATGCCAATGTGGTCTTTTCAACTCGAAGTTCATCATCACCCTCCTTTGCATATCTTGCTGTTTGTGATTGAAGAGCCAACAGAAGCACTGCTCAATCGTCATTGCAAGCATTGTCAATACGTTGGCTGGGGAAACCATTTGATCTGCAACAAGAAGTATCACTTTGTGTTACCCTCAAAGGAAGCACTTGGTAGCTGCAGGAACTGTGAAGGGTGCTGTGATGGAACTGCTACAGTTAACAATGGTAAGTCCAAATTAATTGAATTACAGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGCCATTTGCTATGTGTCAATGGATTGGAAATGGGTTCTAATTTGGCTGGAAACCAGATCATGGACTTTTGGAACCGTTTGTGCAAGGGATTGCAAGCAAGGAAGGTGAGTTTGAATGACATTTCACAGAAGAAAGGAATGGAACTGAGACTTGTAAATGGAATAGCAAACAGTGAGTCATGGTTCAGTCGTTGGGGTTACAAATATGGTAGAGGAAGCTTTGGTGTAACTGAATCAATGTACCAGAAAGCCATAGAAGCAATAAGAAGCATGCCACTGTACTTGATCACACATCACATAACCAATTCCAACCACGCCATTCCACTCATCTTCTCAAGATATCAAACACTTTCAGATCAGTCCCTTGTTACCCTCGGTGACCTATTTTCTTACATGTTAGACCTCAAATCACGTCTTCCTCCGGAAACTTCCATTGCCTCTTACACCACAACTGCCTTGCTTGAGACCAATTGCCGTTGGTCCCCTAAGAGGATTGAGATGGCAACAAGGGTCATTGTTGAAGCCTTGAAAAAAACTGAGTTCAGATGGGTTTCAAGGCAACAAGTTAGAGATGCTGCTCGTGCATACATTGGAGACACAGGTCTGCTAGATTTTGTGTTGAAGTCCTTAGGAAACCATGTTGTCGGAAACTACTTGGTCCGTAGAAGCTTGAACCCTGTGACCAAAGTCTTGGAATATTGCTTGGAAGACATTTCTAAGGTTTACCCTTGTAATGAAAGTCTGGTAATGAGCAACAAGTACAAGATCACACGAACTCAACTCATGAAAGACATGCTTTATCTGTACAAGTACATTCTCATAGACCCTAAACCTATAATGGGGTCGGAGTTTCTCTCAGCTATACCATTAGCAGCAAGGATAATTCTTGACACCAAGTATTTTATAAGAGATTACTGGGAAGATTCTTCTCACCAAGTTCACCTGGGTTCGGAAGAAAAACTCAACCTTTACTGCACAGTTTTTGTGAGGAATGATGGTGATGGTGATGAGTACCTAAACAAGGCCTTTATGCCACCCCATGAATGTCTCACACTGAAAAGAAATGCTACTGTGAGTGAGTTGAAGCTGGAGGTTGAAAGAAGGTTTAGAGAAATTTATTGGGGTTTGAGGAGTTTTGTGGTGGAATCTGTTGAGGATTTGAGTGTGAATAATGGAAGTGAAATGGTTTTTGGAGTAACGAAAGTGGGTGAAAAGATGGTGCTTGAAGGTCGTAACAGCAACATGAAAGAAAACATTATCATGGAGCAAATGTGTGAACGTGATCCAAATAGTGGTACAGTGGATTGTAGTTGTGGAACCATGGAAGATGATGGTGAAAGAATGGTGTCTTGTGATATTTGTGAAATTTGGCAACATACTAGATGTCTTCGAATTCCAAATGACCAAGACATTCCTCATATTTTTCTATGCAAAAAATGTGAACAAGAAATTGTTTTGCTTCCTTCTTTGCCATGA 1950 0.4108 MLNVDVNGNNKRKRCGRVFRFKNFAEPGYPVIFGGPFCQNVNALLQYANFETHLSMPMWSFQLEVHHHPPLHILLFVIEEPTEALLNRHCKHCQYVGWGNHLICNKKYHFVLPSKEALGSCRNCEGCCDGTATVNNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLEMGSNLAGNQIMDFWNRLCKGLQARKVSLNDISQKKGMELRLVNGIANSESWFSRWGYKYGRGSFGVTESMYQKAIEAIRSMPLYLITHHITNSNHAIPLIFSRYQTLSDQSLVTLGDLFSYMLDLKSRLPPETSIASYTTTALLETNCRWSPKRIEMATRVIVEALKKTEFRWVSRQQVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISKVYPCNESLVMSNKYKITRTQLMKDMLYLYKYILIDPKPIMGSEFLSAIPLAARIILDTKYFIRDYWEDSSHQVHLGSEEKLNLYCTVFVRNDGDGDEYLNKAFMPPHECLTLKRNATVSELKLEVERRFREIYWGLRSFVVESVEDLSVNNGSEMVFGVTKVGEKMVLEGRNSNMKENIIMEQMCERDPNSGTVDCSCGTMEDDGERMVSCDICEIWQHTRCLRIPNDQDIPHIFLCKKCEQEIVLLPSLP 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01422 649 SMART PHD_3 593 639 IPR001965 -
Vian10g01422 649 SUPERFAMILY FYVE/PHD zinc finger 586 641 IPR011011 -
Vian10g01422 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 578 642 IPR013083 -
Vian10g01422 649 ProSitePatterns Zinc finger PHD-type signature. 594 638 IPR019786 -
Vian10g01422 649 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 643 - -
Vian10g01422 649 CDD PHD_MMD1_like 593 638 - -
Vian10g01422 649 Pfam PHD-finger 594 640 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01422 Vian-Chr10 24362165 24364595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01422 11 649 PHD Transcription Factor Family AT5G22260 50.825 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian10g01422 PHD 3.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01422 K26271 - gmx:100780210 1116.29