Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01420 ATGGACCTCACCAACGACACAAATTCTCAAACTCAAACCCCCCAACAGCCCACCACCACCACCACCACCAACGGATCCCTCAAGCGCCACCGCCCCACCACCGTTCCTCCTCCCTCACAACCACCGCCCGCGGTGGTTTCCTACAAGGAGTGTCTCAAAAACCACGCTGCCAGTATAGGTGGCCACGCGCTTGATGGATGCGGTGAGTTCATGCCCTCCTCTTCCTCCAATCCCACAGAACCCCGCTCGCTAACGTGCGCCGCCTGTGGATGCCACCGTAACTTCCACCGCCGTGACACACATCAGTATCAAAATAATCATTCCAACCCCAGGCCCAATTTCATAAGCTTCTACCACTCACCGCCGCCACCCCATCATGGCCCCGGCCTGTGTACTAGCTCAAGCCCAGGCCCGAGTCCAACCCCAAGTCCGTTGTCAAGCCCAAGCCCGCCGCCTCTCTCCCACCGTTTCCCAGGTTGGAGACCGGTCCAGGGGCTCTTCGGCCAGGGAAACGAGCATCACCTTACGAGTTTCAATCTTTCCGAGAGCCCCAGTGGAAAGAAGAGGTTCAGGACCAAGTTCAGCCAAGAGCAGAAGGAGAAGATGCAGAATTTCTCTGAGAATTTGGGGTGGAGAATGCAGAAAGGGGATGAAGGGTTGGTGCAAGATTTCTGCAATGAGATTGGCGTTTCAAGAGGGGTCTTCAAGGTGTGGATGCACAACAATAAGAACAGTAGCAGGAAGAGATCGTTGGAGCCTGATGAAAAGATCAATGTCAATGCTTCTGATACTCTTAATAACAATCCATACAGCACCACCGATGACACTCACTGA 834 0.5432 MDLTNDTNSQTQTPQQPTTTTTTNGSLKRHRPTTVPPPSQPPPAVVSYKECLKNHAASIGGHALDGCGEFMPSSSSNPTEPRSLTCAACGCHRNFHRRDTHQYQNNHSNPRPNFISFYHSPPPPHHGPGLCTSSSPGPSPTPSPLSSPSPPPLSHRFPGWRPVQGLFGQGNEHHLTSFNLSESPSGKKRFRTKFSQEQKEKMQNFSENLGWRMQKGDEGLVQDFCNEIGVSRGVFKVWMHNNKNSSRKRSLEPDEKINVNASDTLNNNPYSTTDDTH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01420 277 MobiDBLite consensus disorder prediction 243 277 - -
Vian10g01420 277 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 48 99 IPR006456 -
Vian10g01420 277 Gene3D - 176 248 - -
Vian10g01420 277 SUPERFAMILY Homeodomain-like 179 248 IPR009057 -
Vian10g01420 277 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 245 - -
Vian10g01420 277 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 48 99 IPR006456 -
Vian10g01420 277 MobiDBLite consensus disorder prediction 100 161 - -
Vian10g01420 277 MobiDBLite consensus disorder prediction 116 157 - -
Vian10g01420 277 MobiDBLite consensus disorder prediction 1 45 - -
Vian10g01420 277 NCBIfam homeobox domain, ZF-HD class 187 244 IPR006455 -
Vian10g01420 277 FunFam Zinc-finger homeodomain protein 2 175 248 - -
Vian10g01420 277 Pfam ZF-HD protein dimerisation region 46 100 IPR006456 -
Vian10g01420 277 MobiDBLite consensus disorder prediction 257 277 - -
Vian10g01420 277 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01420 Vian-Chr10 24312422 24313255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01420 44 247 ZF-HD Transcription Factor Family AT5G15210 48.529 1.04e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian10g01420 ZF-HD_dimer 7.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01420 - - gmx:100817446 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01420 10 24312422 24313255 Vian10g01420 10 24312422 24313255 ECH