Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01417 ATGGAAGAGATAAACAATGATGCTGAGAAACTTGATGAAGTTATGCTACCTGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAGGAAGATCCAGCAACGCCCTTTCACTATTGAGCTCATCAAACAGCTTGATATCTATAAATATGACCCTTGGGATCTTCCAAAGTTGGCGACCACAGGAGAGAAAGAGTGGTATTTCTATTGTCCCAGGGATAGAAAATACAGAAACAGTGCAAGGCCAAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATAGGCCAATCTACTCCTCAGAAGGTTCCAAGTGCATTGGCCTGAAGAAATCTCTGGTTTTTTACAAGGGTAGAGCTGCCAAAGGAGTTAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTCACAGACTCACTGTCCCCAAAGTACATAGACAAGAACATTCCTGCTAATGAATCATGGGCTATTTGCAGGATATTCAAGAAAACCAATTCTACAGCTCAAAGAGCTTTATCTCAGTCTTGGGTTTCTTCCCTCCCTGAAACAAGAACCTCTGATCATATCCAAACCAAAGAACAAAACAGCACGAAGTTTTGTTCAGACATATCGTTTACAAAGAAAACTACCTTAGCCAGTCATTACTGTACTAACAATTACAATGACGCACAACCTTTGACCCCTAATAGTAGTACCACACTTTGTCCCTTAGATGTTGCCTCATACAAATCCATCATCAACCCATTGCTTTACAAAGCCTTTGATCATTTTCCCATTTCAAATGGAGACCTAAGCACGAGCTTTCTGTTCTCATCTCCTTTTGAAACGTCATCAGATGGTAATACTAATGCTAACGTTTCTTCCATGTTGTTGAACATGTCATCCTCCGTGGTTGGAGATTTCAACAAGACTTCAGAGGATAATACAAATGCAACTGCAAGCTTTGGTGGGTTACAAGAGCATGGCTACCCACTACCATTTCTACGTGAGATGCAAAGCACATTTGGTGAACAACAATATGATAATATTAATGCATTGGTAAAGGGTCCTAATGTGAATATGCCTCGTGTTGATGACCAAGAGTTGGAAACAGTACGATCCATTGGGTTTCCATTCAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCTCTTTTCCTTGTGATCTGTCATCTACTTATTCCACAACTAAGTGCTATACTTAG 1242 0.4114 MEEINNDAEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPFTIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKYIDKNIPANESWAICRIFKKTNSTAQRALSQSWVSSLPETRTSDHIQTKEQNSTKFCSDISFTKKTTLASHYCTNNYNDAQPLTPNSSTTLCPLDVASYKSIINPLLYKAFDHFPISNGDLSTSFLFSSPFETSSDGNTNANVSSMLLNMSSSVVGDFNKTSEDNTNATASFGGLQEHGYPLPFLREMQSTFGEQQYDNINALVKGPNVNMPRVDDQELETVRSIGFPFNIGDAWKSNLLWDTSSFPCDLSSTYSTTKCYT 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01417 413 FunFam NAC domain-containing protein 35 24 175 - -
Vian10g01417 413 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 235 - -
Vian10g01417 413 Gene3D NAC domain 24 177 IPR036093 GO:0003677|GO:0006355
Vian10g01417 413 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Vian10g01417 413 ProSiteProfiles NAC domain profile. 15 172 IPR003441 GO:0003677|GO:0006355
Vian10g01417 413 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01417 Vian-Chr10 24271380 24272904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01417 1 258 NAC Transcription Factor Family AT1G26870 63.235 6.15e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian10g01417 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01417 - - gmx:100783995 676.781