Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01406 ATGGAATTGGAGGCTGATCATCAAAATGGGATCCGAAGCAGACCCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACGTTGATGACGTCACAGAACAACCTTGTTCCACCACTACCAGGGACAGCGTCGTAACTGCAACTACAATTACTACTGCGTCTGTAACTAATAACAACCTCCACTTGGCGGAGCAGTCCAAGAAGCCTCCGCCAAAGAGGACTTCCACCAAGGACCGCCACACCAAGGTCGATGGCCGAGGCCGCCGGATCCGCATGCCGGCGGCCTGTGCTGCCAGAGTCTTTCAGCTAACGCGTGAGCTGGGACACAAGTCTGACGGAGAGACCATAGAATGGCTCCTTCAGCAGGCCGAGCCATCGGTCATCGCTGCCACCGGCACCGGCACCATTCCCGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCGGGCTCCACCATGTCGGCGCCGTCGCACTACTTTCGCGGAAACTACTTCAACCCTAGCACGTTCTCAACCTCCACAGCTGCGGCTGCGGCGGCGGCGCAGCTAAGGAACCGCGCAGAGTGGGACCGGAGCATGAGCATGGTGATGGAGGATTCTCGTAGGAGCATGTTGGAGAACACTTCTTCCATCTCCGCAATTTTGAATTTTAACCCTATGGGTAACATCAATGTAATTCAGCAAGCGAAACAAGAGCTTCGAGAAGAATCCGGTGGCGGTCTTGAATCGGTTGCTTCGGATTCTGTCGGAAGCTTAGGGAGAAAGAGAAGGCCAGAGCAAGAACTGTCACAAATGGGAAGCTATTTGATACAATCGAGCACGGGGTCGCTTCCATCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCGGGTCACGGTAACCAATCCACGAGCGGTGGTGGAGGTGGCGGCAGCGGCAATGGTAACGATAATCCCATTTGGGCAATTCCCTCCGTTGGGAACAGTGGGGTGTATAGAGGAGGTATGTCTCCTCCAGGTGGCATTCATTTCATGAATTTTGCTTCTCCGATGCCCCTTATGCCCGGTGGTCAGCTGGGTTCTGGTATGATTGGTGGCGGTGGTGGTAGCGGTGGTGGTAGCGGCGGTGCTCAACTTCTAAGCGAAAGTAACTTAGGCATGCTTGCAGCCCTTAATGCCTACAGACAGATGCCGGCGAACGGCGTCTCGGAGTCTCCAGGAAGCGGCGGACAACCTCACGGCGGAGATGATGGACGTGACTCAACCAGTCAACATTCCTGA 1266 0.5529 MELEADHQNGIRSRPNFPLQLLEKKDVDDVTEQPCSTTTRDSVVTATTITTASVTNNNLHLAEQSKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSTAAAAAAAQLRNRAEWDRSMSMVMEDSRRSMLENTSSISAILNFNPMGNINVIQQAKQELREESGGGLESVASDSVGSLGRKRRPEQELSQMGSYLIQSSTGSLPSSHASNTAAFWMVAGHGNQSTSGGGGGGSGNGNDNPIWAIPSVGNSGVYRGGMSPPGGIHFMNFASPMPLMPGGQLGSGMIGGGGGSGGGSGGAQLLSESNLGMLAALNAYRQMPANGVSESPGSGGQPHGGDDGRDSTSQHS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01406 421 ProSiteProfiles TCP domain profile. 75 129 IPR017887 -
Vian10g01406 421 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 39 383 IPR005333 GO:0003700
Vian10g01406 421 MobiDBLite consensus disorder prediction 65 83 - -
Vian10g01406 421 Pfam TCP family transcription factor 73 195 IPR017887 -
Vian10g01406 421 MobiDBLite consensus disorder prediction 234 263 - -
Vian10g01406 421 MobiDBLite consensus disorder prediction 55 83 - -
Vian10g01406 421 MobiDBLite consensus disorder prediction 393 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01406 Vian-Chr10 24097839 24099104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01406 15 353 TCP Transcription Factor Family AT3G47620 41.985 7.21e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian10g01406 TCP 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01406 - - vum:124821453 687.182