Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01405 ATGTCCTCCGCGGTGGCTCCATCTTCGAAGTCTTTGAAAAGCAGCCCTGGAACTTTAAGCGTTGGAGGGCTAGTGATGCTCTTTCTCCCTCCTGGGACGCACAAAAGGAAAATGCCGCGAGGGACAATGGCTGCGGCGAAGCGGTTGTCGTTGCCCGAAATTGAGGAGTTGCAGCTGTCAACAACAGTAACGGTGGAGAAGTCGGTGGAGTTCCCAGCTACATTGTCGAAGAACCCGTCGGACACAATGGCGTCGGCATGGGAGAAGTCGAGGAGTCTGGTCAGCGTGGCTTATCCTGCTGAGAGAATTGGTCAGCTCTTCCGACGCATGGATGCTCTTCGGTGTTGGGTGGGGGATTTGGAGAATAAATACCACCTGACGGGTTCGACGGTGGGACCACACCCATTGTCGAGCATGGTTCGGGAGTTTCAGTCGGTGATAGGGAAGAAAACGAGGATGCAAGCATTGGAAAAGTGGGGAGGTAAGCCAGATGTTCTGGTGGCTTGCGTGGGGACAATATCAAATGCTTTGGGTATGTTTCATGAGTTTGTAGGAGATGATAATGTAAGGTTGATTGGAGTTGAAGGTGGAGGTTTGGGACTTGATAGTGGCAAACATTCTTCAACGTTGACCAAAGGAGAAGTTGGAGTCTACCATGGAGCCATCAGCTATTTACTACAGGATGAACATGGCCAGATTATCCATCCACATTCCATTGTTGCTAGTGGTGAGTTCGTGTTGTTGCTTGATTCATGGTGGGTTCATGGTGTTGTGGAGTTTGGTGCTTCCTTTGTTATTGTCTCTGATTCAGCTCATAACCAGTCCTACAAGGCCCACAAAAATGGCATCAAGAAGCCCAATAGGCATCGCCACACTTCCACCAAAGGAATGGACCCCAAGTTTCTGAGGAATTAG 915 0.4984 MSSAVAPSSKSLKSSPGTLSVGGLVMLFLPPGTHKRKMPRGTMAAAKRLSLPEIEELQLSTTVTVEKSVEFPATLSKNPSDTMASAWEKSRSLVSVAYPAERIGQLFRRMDALRCWVGDLENKYHLTGSTVGPHPLSSMVREFQSVIGKKTRMQALEKWGGKPDVLVACVGTISNALGMFHEFVGDDNVRLIGVEGGGLGLDSGKHSSTLTKGEVGVYHGAISYLLQDEHGQIIHPHSIVASGEFVLLLDSWWVHGVVEFGASFVIVSDSAHNQSYKAHKNGIKKPNRHRHTSTKGMDPKFLRN 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01405 304 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 110 250 IPR036052 -
Vian10g01405 304 Gene3D - 268 304 - -
Vian10g01405 304 PANTHER TRYPTOPHAN SYNTHASE-RELATED 111 241 IPR023026 GO:0000162|GO:0004834
Vian10g01405 304 Pfam Ribosomal L29e protein family 270 304 IPR002673 GO:0003735|GO:0005840|GO:0006412
Vian10g01405 304 Gene3D - 145 242 IPR036052 -
Vian10g01405 304 Gene3D - 111 144 IPR036052 -
Vian10g01405 304 MobiDBLite consensus disorder prediction 279 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01405 Vian-Chr10 24082430 24090070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01405 268 304 Cytoplasmic Ribosomal Protein Gene Family AT3G06680 81.081 2.91e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01405 K01696 - vum:124821443 260.381