Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01396 ATGTCCTCCAGAAGATCTCGTTCCAGACAATCCGGTGCTTCCGCTGAGATCACGGATGCGCAAATCACCGATCTCGTTTCCAAGTTGCAACAACTTATCCCTGAACTTCGCGCCAGGCGCTCCGACAAGGTTTCGGCTTCTAAGGTATTGCAGGAGACATGCAACTATATAAAGAACTTGCACAGAGAGGTTGACGATCTAAGCGATCGATTATCAGAGCTTCTGGCTAACACAGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTACTTATGGTTTGGTTTGTACTTTCTAGACACCAACGCGAAACACCACCATCGGATCCATGTGAAGCAGTTGTTGATTAG 351 0.4729 MSSRRSRSRQSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSASKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLMVWFVLSRHQRETPPSDPCEAVVD 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01396 116 FunFam Transcription factor ILI6 7 89 - -
Vian10g01396 116 CDD bHLH_AtPRE_like 17 77 - -
Vian10g01396 116 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Vian10g01396 116 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vian10g01396 116 Coils Coil 57 77 - -
Vian10g01396 116 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Vian10g01396 116 Gene3D - 20 89 IPR036638 GO:0046983
Vian10g01396 116 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01396 Vian-Chr10 23794781 23795583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01396 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 71.277 1.35e-36 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g01396 HLH 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01396 - - gmx:100804830 166.007