Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01394 ATGTGGCCTAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCATCAACCTCCACCTTCGCTCACGTCAATTCTACCCGCCTGCACACCTCAAGAATATCATGGGGGAGTGACCTTTCTGGGTAAGAGATCCATGTCATTTTCATCAGGAATTGAGCACGGAGAAGAGGCCAATGCTGAGGAAGATTTGTCCGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGTAATAAGCTTGAGCCAGAGAGGAAAATGCAACTTGCAAGAGCTCTTGGCTTGCAGCCAAGACAAATTGCTATATGGTTCCAGAACAGAAGGGCAAGGTGGAAGACCAAGCAGTTGGAGAAAGACTACGATCTTCTCAAAAGACAGTATGAAGCCGTCAAGTCAGATAATGATTCACTTCAAACTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCCATCAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAACAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCTCTCTACACATCAGCCGAGCAGAACCCTGTTTCCATCTTCTGCTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGACCTTCCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTCTGTGCCATGGATGATCAATCCGGGTTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA 864 0.4595 MWPKTCNEMAFFPANFMLQTPHHDDHQPPPSLTSILPACTPQEYHGGVTFLGKRSMSFSSGIEHGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKSDNDSLQTQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQPSRTLFPSSARPAGVAQLFQTSSRPDLPCQKIDQMVKEESLSNMFCAMDDQSGFWPWLEQQHFN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01394 287 CDD homeodomain 84 140 IPR001356 GO:0003677
Vian10g01394 287 SUPERFAMILY Homeodomain-like 75 141 IPR009057 -
Vian10g01394 287 SMART HOX_1 82 143 IPR001356 GO:0003677
Vian10g01394 287 MobiDBLite consensus disorder prediction 187 207 - -
Vian10g01394 287 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Vian10g01394 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 63 219 IPR045224 GO:0003700
Vian10g01394 287 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Vian10g01394 287 MobiDBLite consensus disorder prediction 184 207 - -
Vian10g01394 287 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Vian10g01394 287 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Vian10g01394 287 Gene3D - 76 145 - -
Vian10g01394 287 MobiDBLite consensus disorder prediction 62 90 - -
Vian10g01394 287 FunFam Homeobox-leucine zipper protein ATHB-13 76 143 - -
Vian10g01394 287 Pfam Homeobox associated leucine zipper 139 179 IPR003106 GO:0006355|GO:0043565
Vian10g01394 287 Coils Coil 131 179 - -
Vian10g01394 287 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01394 Vian-Chr10 23751383 23753093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01394 5 287 Homeobox Transcription Factor Family AT1G69780 64.667 7.00e-124 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian10g01394 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01394 K09338 - gmx:100808033 526.554