Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01390 ATGCAAGAAGATATGAAGAAGCAGCAGAAGCAGAAGCAGCTGGTCAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATACTCAGGGAGCAGATTGGCATCCATGGAACTGAAAATTGGGCAATCATTGCTTCTAAATTCAAGGATAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTATTTGAATTCTGACTTCAAGAAAGGAGGATGGTCACCAGAGGAAGACATGCTTTTATGTGAGGCTCAAAAACTATTTGGTAACAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACACTGTGCAAAAAGAGAGCAAAATATGAAGCCTTAGCAAAAGAGAACAGCTCTTCATACATCAATTCAAATAACAAAAGGACTTTTCTCCAGCACAGGTGTGATACAGATGTAGCATCAGAATCTGCAGTAGCTATTAAAAAGATGAGGAGGTCACATATCCCCGATGCTGAAGAAAATATCAACTTTGGAGACAGATCACATAAACAAAACGGAATTCCAATAAATCAGCAGTCAAGAGCACCATTTGCAGTTTTAGCTCAAAACTCTCGCAATGTCAACTTGCCAGACCAGGATCATGTCTGCAATTTGAAGTTTAGTGATTATGCCCAAAACAAGATTCAAGGAACATTCCTTAAAAAGGATGACCCAAAGATAAATGCGTTGATGCAACAAGCTGAGTTATTAAGCTCACTGGCTCTAAAAGTTGATTCAGAGAACGTGGATCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTCAACAGAACCAAAGAATCAGACATCCCCAGATGCAAGATTCCAGATTTACAACTTGTAGATCTTAAAGATTTGTTGGAGGACTTGAAAAACAGTAGTGAGGAAATGCAGCCATGCTGGAGGCAAATGGAACTATATGAAGACTCTCCAGGCAGTTCTGAATACAGTACGGGATCAACTCTGCTGCCTCATTCAGCTGGTGAGAATTTGGAACAGTCATTACATCAGGACATTGGAACCGAACTGAATATACAAATGGGTGGTCCTGAAGAACTTAGGGGATGTCACCAAGGGGTTCTTTCAAGTGCAACTCTAGATCAAGATTTATTCCCATCTTGTGAGGAGCAGATAAACAATGATGGCATTGTTTCTGCCTTGTCATGTTCGGAGGATTTCAGTTCACCTCTTCAAGTTACACCTCTGTTTAGATCCTTAGCTGCTGGAATTCCTAGCCCGCAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACGCTTGGAATGGAATCTCCATCGCTCAACCCAAGTGTTAAACCGTCACAACCGCCTCTCTGCAAAAGAGTGCTCCTAATCTGA 1422 0.4128 MQEDMKKQQKQKQLVNEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKLFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENSSSYINSNNKRTFLQHRCDTDVASESAVAIKKMRRSHIPDAEENINFGDRSHKQNGIPINQQSRAPFAVLAQNSRNVNLPDQDHVCNLKFSDYAQNKIQGTFLKKDDPKINALMQQAELLSSLALKVDSENVDQSLENAWKVLQEFLNRTKESDIPRCKIPDLQLVDLKDLLEDLKNSSEEMQPCWRQMELYEDSPGSSEYSTGSTLLPHSAGENLEQSLHQDIGTELNIQMGGPEELRGCHQGVLSSATLDQDLFPSCEEQINNDGIVSALSCSEDFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNPSVKPSQPPLCKRVLLI 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01390 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 76 IPR017930 -
Vian10g01390 473 Gene3D - 80 153 - -
Vian10g01390 473 Gene3D - 15 77 - -
Vian10g01390 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Vian10g01390 473 Coils Coil 5 25 - -
Vian10g01390 473 PANTHER MYB PROTEIN-RELATED 28 161 - -
Vian10g01390 473 CDD SANT 81 122 IPR001005 -
Vian10g01390 473 SMART sant 25 74 IPR001005 -
Vian10g01390 473 SMART sant 77 125 IPR001005 -
Vian10g01390 473 CDD SANT 28 72 IPR001005 -
Vian10g01390 473 Pfam Myb-like DNA-binding domain 29 89 - -
Vian10g01390 473 ProSiteProfiles Myb-like domain profile. 29 72 IPR001005 -
Vian10g01390 473 FunFam Transcription factor MYB124 21 77 - -
Vian10g01390 473 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Vian10g01390 473 SUPERFAMILY Homeodomain-like 25 119 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01390 Vian-Chr10 23675109 23679591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01390 14 323 MYB Transcription Factor Family AT2G02820 63.492 1.20e-136 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian10g01390 Myb_DNA-bind_6 8.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01390 K09422 - gmx:100807667 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01390 10 23675109 23679591 Vian10g01390 10 23675109 23679591 ECH