Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01387 ATGGGGAAAGGAAGAAGTCCTGGCAAATGGTTCAAGAACTTACTCTTGGGGAAGAAATCGTCGGCAAAGTCTACTTCATCGAAGAAGAATGATATTTTTAAACCTTCAAGTAATAAGGATGTGGTGTTGTCTTCTGAGGTGCCTGTGTCTGATTCACCTGTCAATTCTCTGCTGATATCCCCGCCGATATCTGGAGCTAATGATACCAAAGGAGTGATTTCAGAAAAGGAGGTAGTAAGTAGATCTTCGCATGATAACAATGTTCTTTCAACTGGAGATGAAGAGGCCAAGGTGAAGGATGTTGCTAATTTTGAAACTCAAGAGGATCCTGAGAAACATCAGCTTACAGAAGCAGCTATAAAAGTTCAGGCCGCTTGTAGAAGCTATCTGGCTCGTCGAACATTTCAAACACTCAAAGGTGCCATACAACTACAAGCTCTCATTCGTGGTCACTTGGCTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAGGGAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGACGTTCTGATATTGGCCATGCTGTCCAGAAGATTTGTAAGGATGCTCATTGTTCAAATTCTATTTTGGTAGTTTCATCAACACGGGAAGAGAAGGTGTCAGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATATGCAGTTCCTCTATCACTCACCAGTGATCCAGGAGAACCTAACTTTGGTTGGAAGTGGCTTGAATATTGGACACAGTCACACTTTTGGGCACCTCTTCCTGTATTGAAAAAGAAATCTGACTCGCTGTCTGATGAGAAAAATGGCAGTTCCCAGACAGTTCAAAGGGGACAAGTTAAAAGAACTACTAGAAAATCTGCTGCCATGAAAGGTGACAATGGCTCTGTTTTAGCTGCTAACAGATCTAAACAGCGTCCAAAAAAGGATTCAAGCCATCCATTGCCTTCAGCTCAAGAACACCCACAAAAAGAAACTGAAAAAAGTAGTCTTGAGAAAAAACATGCACATAATGTTTCAAATGGATCTGAGGTTGTTAATGAAAAAAGAAAAAACAGCAGTAGAAAGATTTTGGATCACACTGTCACTGATGTTTTAGAGCAGGTCCCAAATGCCTCTTCAGAGAAAATGGAAGATTTGACGGTGGCAAAGTCAGAAGAGTCTGATCCTGGGAAGGGTCATGCACAGCCAGCAAAAGATGAGAATTGTAATGAGCCACATAATGATCCTATTGCTGTTTCAAGGACTAGTGTGAAGAAGGGTGAAAATGAAAAAAATCAAGGAGTTGGTGAGGATCAGAATGGTGGTGATGATAATTGTATCAGTAACAATTGCCAGAGAAGAGCTTCACTACCTGCAAACTTTAATGATCAAGATGGTGAGGTATATGGCACTCCTGTCACTCCAAGGCTGCCCAGTTATATGGCTCCTACCGAATCTGCAAAGGCCAAGCTAAGAGGACAAAACTCCCCAAGATTTGCTACTGATTTGGTAGAAAAAAGCAGTACAACCAGGCGGCATTCACTTTCATCCTCACTCAATGGAAGGTCGGGTTCATTTTCCCCGAGAGCTGAAAGGCTGATGGCCGTGAGTGGCAGAGGAGTGATAAAGTCTGATAGATCTCTGTCATCTTCAAGAGATGGAACTGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA 1695 0.4218 MGKGRSPGKWFKNLLLGKKSSAKSTSSKKNDIFKPSSNKDVVLSSEVPVSDSPVNSLLISPPISGANDTKGVISEKEVVSRSSHDNNVLSTGDEEAKVKDVANFETQEDPEKHQLTEAAIKVQAACRSYLARRTFQTLKGAIQLQALIRGHLARRQAVSALYCVKGIVKFQALARGYNVRRSDIGHAVQKICKDAHCSNSILVVSSTREEKVSENVFVCKLLASSPYAVPLSLTSDPGEPNFGWKWLEYWTQSHFWAPLPVLKKKSDSLSDEKNGSSQTVQRGQVKRTTRKSAAMKGDNGSVLAANRSKQRPKKDSSHPLPSAQEHPQKETEKSSLEKKHAHNVSNGSEVVNEKRKNSSRKILDHTVTDVLEQVPNASSEKMEDLTVAKSEESDPGKGHAQPAKDENCNEPHNDPIAVSRTSVKKGENEKNQGVGEDQNGGDDNCISNNCQRRASLPANFNDQDGEVYGTPVTPRLPSYMAPTESAKAKLRGQNSPRFATDLVEKSSTTRRHSLSSSLNGRSGSFSPRAERLMAVSGRGVIKSDRSLSSSRDGTEKLIQPQWRR 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01387 564 MobiDBLite consensus disorder prediction 266 479 - -
Vian10g01387 564 Pfam IQ calmodulin-binding motif 165 181 IPR000048 GO:0005515
Vian10g01387 564 Pfam IQ calmodulin-binding motif 139 156 IPR000048 GO:0005515
Vian10g01387 564 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Vian10g01387 564 MobiDBLite consensus disorder prediction 384 411 - -
Vian10g01387 564 MobiDBLite consensus disorder prediction 433 458 - -
Vian10g01387 564 Pfam Protein of unknown function (DUF4005) 462 543 IPR025064 -
Vian10g01387 564 MobiDBLite consensus disorder prediction 308 344 - -
Vian10g01387 564 MobiDBLite consensus disorder prediction 503 524 - -
Vian10g01387 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 181 IPR027417 -
Vian10g01387 564 MobiDBLite consensus disorder prediction 272 288 - -
Vian10g01387 564 SMART iq_5 137 158 IPR000048 GO:0005515
Vian10g01387 564 SMART iq_5 162 184 IPR000048 GO:0005515
Vian10g01387 564 SMART iq_5 114 136 IPR000048 GO:0005515
Vian10g01387 564 MobiDBLite consensus disorder prediction 542 556 - -
Vian10g01387 564 MobiDBLite consensus disorder prediction 353 367 - -
Vian10g01387 564 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Vian10g01387 564 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Vian10g01387 564 PANTHER IQ-DOMAIN 5-RELATED 1 521 - -
Vian10g01387 564 MobiDBLite consensus disorder prediction 503 564 - -
Vian10g01387 564 Gene3D - 113 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01387 Vian-Chr10 23545157 23549375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01387 4 564 IQD Protein Family AT1G14380 36.629 2.70e-78 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01387 - - gmx:100800548 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01387 10 23545157 23549375 Vian10g01387 10 23545157 23549375 ECH
Vian10g01387 10 23545157 23549375 Vian1g00757 1 7883926 7891723 ECH