Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01382 ATGTCCCACATTGTTTACTCCCTCCCCTTAAAGCACCTCTCACTACCCTTCCACTCTTTTGTTCCTCGCAAATTCATTGTTCCTTTGAACAGGAACTTTTCTTTCATTTTTCCAACTTCACTCTCTGTCAGATGCAACCACTCCAACATCGTGGAACCCTTCCCACCACTGCCTCAATATCCTTCGGTTGCAGAATTGCCGCAAAGGGTGTATGCAGATTACTCTGTTTATACAGCAAAGGGTGTGCTCACCTTGACTCCTAAACCTCCGGAATTTGAATCAAAAGCTGTGGTTCAAGATTCGTATGTTTTTGCTCTTCAAATGTATAAATGTGTTGTTGACATCAGTTTGAGTGGTTGCTTAGGGGCTACATTGGTGTTCTCACTTTCGGTAAGTGAAATGGGGACTCTAATTAGCCTTGGTGCAATGGAGTCTTGGGAATTTTCACGGGAGACTGCAAAGGCAAAAAGCAATGGAATTGAAGTTAGAAAAGTTTTGAAGATGGAGCCACTTCTGGATGCTACTGGTCACTCATTTAGCTTAAGTGTTTATAAAAAACCTGCGAACATGGAGGAAATTGAGGAAAACATCTATCTCCCTATTAGAAGGGCGCAGCTAGCAGTTTTAAGGTCAATTTTCAATTATATCGTGCCGTACCTTCTAGGTTGGAGTGCATTTGCAAGCACCATAAAGGCAGAGGTATATAGTCAAATGAACAGTGCCAACCCCAGATACAGTGCAAACAATGAAAGGAACAGATAG 762 0.4226 MSHIVYSLPLKHLSLPFHSFVPRKFIVPLNRNFSFIFPTSLSVRCNHSNIVEPFPPLPQYPSVAELPQRVYADYSVYTAKGVLTLTPKPPEFESKAVVQDSYVFALQMYKCVVDISLSGCLGATLVFSLSVSEMGTLISLGAMESWEFSRETAKAKSNGIEVRKVLKMEPLLDATGHSFSLSVYKKPANMEEIEENIYLPIRRAQLAVLRSIFNYIVPYLLGWSAFASTIKAEVYSQMNSANPRYSANNERNR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01382 253 Pfam Whirly transcription factor 76 212 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vian10g01382 253 SUPERFAMILY ssDNA-binding transcriptional regulator domain 68 251 IPR009044 GO:0003677|GO:0006355
Vian10g01382 253 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 62 244 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vian10g01382 253 Gene3D Transcriptional Coactivator Pc4; Chain A 63 241 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01382 Vian-Chr10 23442060 23447417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01382 41 253 Whirly Transcription Factor Family AT1G14410 43.498 3.87e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vian10g01382 Whirly 4.5e-21 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01382 K26559 - pvu:PHAVU_002G089800g 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01382 10 23442060 23447417 Vian10g01382 10 23442060 23447417 ECH