Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01376 ATGACTAAATTATACAGCATCTTGATTTTAACCTGTTTGGTAGTGACCATACCTACCTTATATGGCAATATTTTAGAGGATGAAGAGTATTGGGGGAAGCAAGCTGCATTATTTGATGAGTATTGGAAGAAAAAAGAAGCAAGTGCTGAACTAGAGAACAAAAGAGCTTATATTAATGATCCATTTTCATTCAGCGGCAACGTGACTGATAATATTTCTGACCTGATAATTAGTGATGAAAAAGCGGAAAAAACTGGAAGAAGGAATTTGGCAGGAAAGTTAACAAATAATCCGTGCTTGGCAACAAACCCGATTGACAGATGTTGGAGGTGTGACAAGAAATGGGAAAAGAATCGGAAGAAGCTGGCAGATTGTGTGCAAGGTTTTGGCAGAAGCACTGTTGGAGGACAGAAAGGTTCGTTTTATGAGGTAACGAGTAACTTAGATAATGACATGGTGAATCCTGTTCCTGGTACCCTTAGGCATGCGGTTACACGAACTGCACCCTTGTGGATCTATTTTTCTCATAGCATGACCATTAGGCTGAGCCAGGAGCTGATTGTGGCAAGTGACAAGACCATTGATGGAAGAGGAGCTGATATCTACATTATGAATGGTGCTGGTTTTACCCTCCAATTCGTCAAGAATGTCATCATCCATGGAATCAAAATTTTTGACATTAATTCTGGCAATGGTGGACTTATCAGAGATTCTGAGACCCACTACGGTCAAAGAACTCAGAGTGATGGTGATGGAATTTCCATCTTTGGCTCTAGCTATGTTTGGATCGACCATGTTTCCATGAGAAACTGCAAAGACGGAATGATCGATGCCATTATGGGTTCTACTGCCATTACCATCTCCAATTGCCACTTCACAGACCACAATGAGGTGATGCTGTTTGGTGCGAGTGACAGCTATGATGGTGATAAGCTAATGCAGATCACACTGTTATTCAACCACTTTGGTAAGAGATTAGTTCAAAGAATGCCAAGATGCAGGTTTGGTTTTTTCCATGTGGTTAACAACGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACAATTATTAGTGAGGGCAACCGATTCACAGCCCCCAACGACAATAATGCTAAAGAGGTAACAAAGAGGACCTACGCAACAGAAGAAGAGTGGAAAAACTGGCAATGGAGATCAATCAGGGATGAGCTAGTGAATGGAGCTTATTTCAGAGAAAGTGGGCCCGTTTTAAAGAACAGACCCTTCACAAAGAAGGACATGGTGTCCTCCAGGCCTGGTTCGTATGTAGTAAGGCTCAGTCGCTACGCTGGGGCCCTAAGATGCGTTGAGGGCAAACCTTGTTAG 1359 0.4246 MTKLYSILILTCLVVTIPTLYGNILEDEEYWGKQAALFDEYWKKKEASAELENKRAYINDPFSFSGNVTDNISDLIISDEKAEKTGRRNLAGKLTNNPCLATNPIDRCWRCDKKWEKNRKKLADCVQGFGRSTVGGQKGSFYEVTSNLDNDMVNPVPGTLRHAVTRTAPLWIYFSHSMTIRLSQELIVASDKTIDGRGADIYIMNGAGFTLQFVKNVIIHGIKIFDINSGNGGLIRDSETHYGQRTQSDGDGISIFGSSYVWIDHVSMRNCKDGMIDAIMGSTAITISNCHFTDHNEVMLFGASDSYDGDKLMQITLLFNHFGKRLVQRMPRCRFGFFHVVNNDYTHWEMYAIGGSKHPTIISEGNRFTAPNDNNAKEVTKRTYATEEEWKNWQWRSIRDELVNGAYFRESGPVLKNRPFTKKDMVSSRPGSYVVRLSRYAGALRCVEGKPC 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01376 452 Pfam Pectate lyase 186 368 IPR002022 -
Vian10g01376 452 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Vian10g01376 452 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Vian10g01376 452 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Vian10g01376 452 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Vian10g01376 452 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Vian10g01376 452 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Vian10g01376 452 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Vian10g01376 452 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Vian10g01376 452 Gene3D - 102 445 IPR012334 -
Vian10g01376 452 Pfam Pectate lyase, N terminus 37 90 IPR007524 GO:0030570
Vian10g01376 452 PANTHER PECTATE LYASE 18-RELATED 78 450 IPR045032 GO:0030570
Vian10g01376 452 SUPERFAMILY Pectin lyase-like 103 443 IPR011050 -
Vian10g01376 452 SMART amb_all 177 374 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01376 Vian-Chr10 23310116 23311857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01376 1 452 Polysaccharide Lyase AT5G15110 50.728 1.61e-176 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01376 K01728 - gmx:100796307 697.582