Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01374 ATGGGTTTGGGTGCTGAGAATGGTAAGGTGGTGGAGCCTTGGGATGTGTGCAAATCAAAAGGGAGGAAGAAGAAGAAAGGGAATGAAGAAGTGGAAGGGGCTGGGTCTGGTTGTTGGTTTAGGCTCAGGTTTATGGGCAGCTGCATTTCCTCAAGATCCAAAGTCGATACCTCAGTCAGTGGCAGCGGCACCAGTACTCATTATGCTGAAAGTAAATCAACTAATGATACTAGTAGAGACCAACCAACGGCTCCAGCAGTCTCTTCTACAACCACTAGTAATGCCGAAAGTAATTCATCCACTTCCAAACTTGAAGAGGAGCTTAAAATTGCTTCCAGGCTGCGAAAATTCCCTTTCAATGATCTTAAGTTAGCTACCAGAAATTTTCGGCCTGAAAGTTTTCTTGGTGAAGGTGGGTTTGGTTGTGTTTTCAAGGGGTGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACTGTTGCTGTAAAAACCCTCAACCATGATGGGCTCCAGGGTCATAAAGAGTGGCTGGCTGAAGTAAATTTTCTTGGCGACCTAGTTCATCCGAACCTTGTTAAACTTGTGGGTTACTGCATTGAAGATGATCAAAGGTTGCTGGTGTATGAGTTCATGCCTCGGGGTAGCCTAGAAAATCACTTGTTTAGGAGATCCCTGCCTCTTCCATGGTCCATTAGAATGAAAATTGCCCTTGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCCGATCGACCAGTAATATATAGGGATTTTAAAACTTCAAATATACTATTAGATGCAGAGTACAACGCCAAGCTCTCGGACTTTGGTCTTGCCAAAGATGGCCCAGAAGGTGATAAAACCCATGTGTCTACTCGAGTGATGGGAACCTATGGCTATGCTGCACCAGAATATGTCATGACAGGTCATCTTACATCAAAAAGTGATGTGTACAGTTTTGGAGTGGTACTACTGGAGATGTTGACTGGGAGAAGATCCATGGACAAACACAGACCCAATGGTGAACATAACCTTGTGGAATGGGCTCGGCCGCATCTGGGAGAGAGGAGAAGGTTCTACAAGTTGATAGACCCTCGTTTGGAAGGGCACTTTTCGGTGAAAGGTGCTCAGAAAGCTGCCCAACTAGCTGCTCATTGCCTTTGTAGAGATCCAAAAGCCAGGCCTCTGATGAGTGAAGTTGTAGAAGCTTTGAAGCCTTTGCCAAACCTCAAGGACATGGCAAGCTCTTCATATTATTACCAGACGATGCAAGCCGACCGCATTGGAGCGAGCCCCAACACAAGAAACGGTCGAACACAAGGAGCATTGCTCAGCCGCAACGGACAGCAGCAAAGGAGTCTTTCTATACCAAATGGTACCTATGCATCTCCTTATCACCATCAGTTTCCTCAACCATCTCCAAAGACCAATGGCAAAGCGTAG 1458 0.4602 MGLGAENGKVVEPWDVCKSKGRKKKKGNEEVEGAGSGCWFRLRFMGSCISSRSKVDTSVSGSGTSTHYAESKSTNDTSRDQPTAPAVSSTTTSNAESNSSTSKLEEELKIASRLRKFPFNDLKLATRNFRPESFLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEADRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPHLGERRRFYKLIDPRLEGHFSVKGAQKAAQLAAHCLCRDPKARPLMSEVVEALKPLPNLKDMASSSYYYQTMQADRIGASPNTRNGRTQGALLSRNGQQQRSLSIPNGTYASPYHHQFPQPSPKTNGKA 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01374 485 CDD STKc_IRAK 135 412 - -
Vian10g01374 485 MobiDBLite consensus disorder prediction 53 104 - -
Vian10g01374 485 FunFam Serine/threonine-protein kinase BIK1 96 214 - -
Vian10g01374 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Vian10g01374 485 MobiDBLite consensus disorder prediction 434 485 - -
Vian10g01374 485 Gene3D Phosphorylase Kinase; domain 1 88 214 - -
Vian10g01374 485 SUPERFAMILY Protein kinase-like (PK-like) 107 409 IPR011009 -
Vian10g01374 485 ProSitePatterns Protein kinases ATP-binding region signature. 135 167 IPR017441 GO:0005524
Vian10g01374 485 PANTHER OS01G0588500 PROTEIN-RELATED 92 412 - -
Vian10g01374 485 Gene3D Transferase(Phosphotransferase) domain 1 215 431 - -
Vian10g01374 485 FunFam Probable serine/threonine-protein kinase PBL8 215 430 - -
Vian10g01374 485 MobiDBLite consensus disorder prediction 53 101 - -
Vian10g01374 485 ProSiteProfiles Protein kinase domain profile. 129 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01374 485 Pfam Protein tyrosine and serine/threonine kinase 134 409 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01374 Vian-Chr10 23288644 23292024 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01374 76 425 Glycoside Hydrolase AT3G07070 52.125 2.64e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian10g01374 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01374 - - gmx:100305443 889.412