Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01368 ATGCCGATGGACCTGTGTGCCCAAATCCAGAGATCCTTCGACCAACGTTACACCTCCCACGCTCGCCACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACTGACCCCCACATCCCGGGCCACCCTATCGTTTTCGCAAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCGCGCTGCGAGGTCCTCGGCCAGACCGCCGCCATCTTCCAGGGCCCGGGCACTTCCCGGAGGTCCGTCATGGAAATCCGCGAGGCCGTCCGAGAGGAGCGCACCGAGCAGGTCGTTTTGCTCAACTACCGTAAGGACGGCACGCCGTTTTGGATGCTATTCCGCGTCTGTCCCGTGTTCAGCGCCGACGGCGGCGCCGTCGTTCACTTCGTCGCTGTTCAGGTCCCGCTTCATAAAAAGGACGGCTCCGGCGTCAGGGATTTCGGCTTCGGGTGCTGTCGGAAGGAAGTGTGCACTGATTCGTTATCGGAGCTTGGTCGCGTGTGTTCCGTGGAGCAAGTGTTGGAACGTGATGTCATTGATGCAGAATTGGAGAGGGAAGATCCGTGTGTGGCGAGTGATGAGGAGATGCGAAGTGCCGCCACTGCCATGGACAATATCTTCTCTGTGCTAACCCATTTTAGTGAAGCAACTGGCAGATTTGTGTGTAGGAAGAGGTGCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACAAATCCTCATTTATCGGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGGTTATGAAAGAAGTGAAGTTTTGGGTCGCAACTGTAGGTTTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAACAACCATGCACAGAAGGACGAAAGTTCATTTTGGAATTTTCTTCACATCTCACCCGTTCGTGA 978 0.5225 MPMDLCAQIQRSFDQRYTSHARHSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYARCEVLGQTAAIFQGPGTSRRSVMEIREAVREERTEQVVLLNYRKDGTPFWMLFRVCPVFSADGGAVVHFVAVQVPLHKKDGSGVRDFGFGCCRKEVCTDSLSELGRVCSVEQVLERDVIDAELEREDPCVASDEEMRSAATAMDNIFSVLTHFSEATGRFVCRKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPHLSDMPIVYASDAFLKLTGYERSEVLGRNCRFLGGTDTDTSTLYLIKESIKAEQPCTEGRKFILEFSSHLTRS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01368 325 SMART pac_2 94 137 IPR001610 -
Vian10g01368 325 FunFam Protein TWIN LOV 1 isoform D 31 210 - -
Vian10g01368 325 Gene3D PAS domain 14 138 - -
Vian10g01368 325 Gene3D PAS domain 246 314 - -
Vian10g01368 325 PANTHER PROTEIN TWIN LOV 1 8 310 - -
Vian10g01368 325 Pfam PAS domain 246 303 IPR000014 -
Vian10g01368 325 Pfam PAS domain 30 131 IPR000014 -
Vian10g01368 325 CDD PAS 256 285 IPR000014 -
Vian10g01368 325 ProSiteProfiles PAS repeat profile. 17 90 IPR000014 -
Vian10g01368 325 SUPERFAMILY PYP-like sensor domain (PAS domain) 248 309 IPR035965 -
Vian10g01368 325 NCBIfam PAS domain S-box protein 43 125 IPR000014 -
Vian10g01368 325 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 129 IPR035965 -
Vian10g01368 325 SMART pas_2 19 88 IPR000014 -
Vian10g01368 325 SMART pas_2 234 307 IPR000014 -
Vian10g01368 325 CDD PAS 28 130 IPR000014 -
Vian10g01368 325 ProSiteProfiles PAS repeat profile. 259 281 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01368 Vian-Chr10 23186647 23188907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01368 16 314 AGC Kinase Gene Family AT5G58140 30.769 2.55e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01368 - - gmx:100785562 522.702