Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01337 ATGGATCCGGCCGCCATCATCAACGCCGCCGCCGCCAACACAACGTCCTACAACCTCTCCGAGATCTGGCAGTTCCCGCCTCCAAACGCGCAAGACGCTACTGCCGCGCTGTGCCTCAGTAGGGCTCATTTCGGGCACGGCCTTTCGGATTTTGGCCCGGGCCCGGGTAGCATTGGCCACAAAAAGAGGCGCGACTCCGAGGAGGAGGAATCGGTTAAGGGCGTCTCCACCAGCAATGGCGTGAAGGAGGGTGGTGGTGTTGGTGATGGGAAACGGGTTAAAACAACAGGGAACCAGAAGAGTGAGAGTGCGAAAGGTGAAGGAGAAAGCAGTTCAGGAAAGCTTGCGGAGCAAGGTGGAAAGCCACCTCCAGAGCCTCCTTCAAAGCAAGATTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTCGCAGAAAGGGCTAGACGGGAAAAGATTAGTGAGAGGATGAAAATTCTTCAGGATTTGGTGCCGGGTTGTAATAAGGTTATTGGGAAAGCTTTGGTTCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTCGAGGCCGTAAATTCAAGAATACCCTCCGGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCATCGCATTCGCTTCTCAACCTACAAGAGAGTATAGCCGAGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAAGTGGTTTTGAAAGAGCAACATAG 789 0.5057 MDPAAIINAAAANTTSYNLSEIWQFPPPNAQDATAALCLSRAHFGHGLSDFGPGPGSIGHKKRRDSEEEESVKGVSTSNGVKEGGGVGDGKRVKTTGNQKSESAKGEGESSSGKLAEQGGKPPPEPPSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIPSGIEVFPPKDFDQQTFDTTGIAFASQPTREYSRGSSPEWLHMQVGSGFERAT 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01337 262 MobiDBLite consensus disorder prediction 48 130 - -
Vian10g01337 262 CDD bHLH_AtBPE_like 131 216 - -
Vian10g01337 262 MobiDBLite consensus disorder prediction 57 72 - -
Vian10g01337 262 Gene3D - 138 211 IPR036638 GO:0046983
Vian10g01337 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 209 IPR036638 GO:0046983
Vian10g01337 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 191 IPR011598 GO:0046983
Vian10g01337 262 Coils Coil 188 208 - -
Vian10g01337 262 Pfam Helix-loop-helix DNA-binding domain 145 192 IPR011598 GO:0046983
Vian10g01337 262 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 62 232 IPR024097 GO:0006355
Vian10g01337 262 SMART finulus 147 197 IPR011598 GO:0046983
Vian10g01337 262 FunFam Basic helix-loop-helix transcription factor 138 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01337 Vian-Chr10 22715472 22718518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01337 1 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 48.805 2.37e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g01337 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01337 - - gmx:100794893 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01337 10 22715472 22718518 Vian10g01337 10 22715472 22718518 ECH
Vian10g01337 10 22715472 22718518 Vian10g01337 10 22715472 22718518 PCT