Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01335 ATGCCGCTGGAAAGTGACGTCACCATCTCCTCTTACCGCCTCTGCTGGGACGTCTTTCTCAGCTTCCGGGGCACACACACGGGCCACACCTTCACCATGCGCCTCTACCACGCTCTCCACGGTCGTGGCGTTCGCGTCTTCCGAAACGACGATGGGTTGGAGCGCCGCGGCGAGATCCAGAAGAAGCTTCTAGAAGCCGTGGAAGACTCTGCCGCCGCCGTCGTCGTTATCTCTCCCGATTACGCGTCCTCGCACTGGTGCCTGGAAGAGCTCGCAAAGATTTGCGAGGTTGGGAGGCTGATCCTCCCGGTTTTCTACTGGGTGGACCCTTCGCACGTGCGAAAGCAAGAGGGTCCCTTCGAGGAGTGGTTCGTGTGGCATGCACAGAGGTTTCCGACAGAGAGGGTTGAGCAGTGGAGGGATGCGATGAAGAAAGTGGGTGGACTCGCTGGTTTTGTTTTGGATGAGAAAAGTGACGGTGACAAGAGTGATGAACTGATTCAGATTTTGGTGCAAAATCTTATGAAGCAGCTGAGGAACACACCCCTGAGTGTGGCTCCATTCACAGTAGGTCTGGATGATAGAGTTGAAGTGTTGAAAAACTTGTTGGACTTAAAATCCAACGATGTAAGGGTTTTGGGGTTGTATGGAATGGGTGGAGTTGGTAAGACAACATTAGCCAAGAGCCTCTTCAACAACCTTGTTGTTCATAGTTTTGAGCGACGGAGTTTCATTCCAAATGTCAGATCACAGGTCTCCAAACACCACGGTTTGGTTTCTCTTCAAAACAAAATCCATGGTGATCTTTGTGGTAGAAAAGAGGATCTGATCACCGATGTCAGCGACGGCATTTCTGCTATACAAAAAATAGTGCAAGAGAATCGAGTTTTGTTGATCCTAGATGACGTTGACGATGTGGAGCAGCTTAACTTTTTGATGGGTAAGAGGGAATGGTTTTACAAGGGAAGTCGTGTAGTGATAACCACAAGGGATAAGGAAATTTTGCACGGGAGTTATGTTGATGTTGATTTTGAGGTGAAGGAATTGGAATTCTCTGAAGCAATGGAACTGTTCTGCTTCCATGCAATCAGAAGAAAGGAACCTGCAGAGGGTTTTTTAGATGTTTCAAAGCAAATTGTGGAGAAGACAGGAGGGTTGCCTTTGGCTTTGGAAGTTTTTGGGTCTTTTCTGTTTGATAAAAGGACCGAGAGGGAATGGAAAGATGCTTTGGAGAAGCTGAAGCAGATTCGTCCTCCATGTCTTCAAGAAGTGCTGAAAATAAGTTTTGATGCGTTGGATGAACAAAAACAGTGTATATTCCTTGACATAGCTTGTTTGTTTGTGCAAATGGAAATGAAGAGAGATGATGTGGTTGACATATTGAATGGATGTGATTTTAGAGGAGAGATTGCGGTGGCTGTGCTCACTGCAAGATGTCTAATTAAGATCATTGGTGATGGAAAAGTGTGGATGCATGATCAAGTTAGAGACATGGGAAGGCAAATTGTTCGTAGTGAAAGCCTTACAGATCCTGGTCTACGAAGCAGGCTCTGGGATCGTGATGAAATCTTGACTGTGTTGAAGAATATGAAGGGAACGAGAAATGTTCAAGGAGTTGTCCTAGATTGTGTGAAGAGAAGAATGTCCATTCCCAGAGATCGCTCAGCAGATGAAATAACTAGGGAAAATTTTCGACGCAAGCCCAGTTGTAAATCTGCATTCGAGTATATTAAAGAGAGGTATAAAAAGTACGTAGAGGATAGAAAAGAGAAAGCAAAAGAGGTTATCCTTCAGTCCAAGCACTTTCAACCAATGGTTTCCTTAAGAATGCTTCAGATTAATTATTCCAGATTGGAAGGACAATTTATATGTCTTCCCCCAAAACTCAAGTGGTTACAATGGAAACAGTGTTCATTAAGGTATATGCCTTCTAGCTATAATCCATTGGAACTTGCAGTCATGGATCTCTCTGAAAGTCTGATTGAAACCTTGTGGAAGGGACGCAGTAACAAGGTGGCTGTGCACTTGACGGTTTTAAACCTCTCCAGGTGCCACCGTTTGACAGCAACTCCTGACTTATCTGGGTATCTGTCTCTTAAAAAACTTAATTTGGAAGAATGTTCTCACTTAACTAGGATTCATGAATCATTAGGGAATCTAAATTCCTTAGTTCATCTTAACTTTCGCCTCTGCTATAACCTCATAGAACTACCTAGTGATGTCTCTGGGCTGAAACACCTCGAGGACCTCGTTCTGTCCGACTGCTGGAAATTGAAAACATTACCAAAAGACTTGAGCTGCATGGTTTCTTTAAGACAGCTACTTCTTGATAGCACTTCTATTACTGAGCTTCCTCTGTCCATCTTCCATCTCACAAAACTTGAAAAGCTGAGTGCAAATGGATGCCACCTTCTGAAGAAGTTACCTACCTGCACTGGGAAACTCTGCTCCCTGCAAGAATTATCACTTAACCATACAGCATTGGAGGAATTGCCAGATTCAGTTGGTTCTTTGGAAAAACTTGAGATGCTTAGTTTGACGGGGTGTAAGTCACTATCAGTGATTCCTAACTCTACTGGGAAACTAATTTCCTTGACTCAATTGTATTTGGACGGCAGCGGAATCAAAGAATTGCCTGCTTCTATTGGTGCTTTATCATATTTAAGGAAGCTGTCTGTTGGAGACTGTACTTCTCTTGACAAATTTCCTGTCTCAATGGAGGCATTAGTTTCAATTGTTGAACTTAAGTTAGATGGCACAAAAGTTTCTAATTTTCCAGACGAAATATTTGTGGGCATGAAAATGCTAGAAAAGCTCGAGATGGGAAAAGTTCAGCATCTAAAATTCGTACCAGTATCATTGGGCTACCTGTCAGCTCTTACCATTTTGGACATGCATGATGCAAACATTACTGAATTGCCAGAATCAATAGGAATGTTGGAAAATCTTATTCGGCTGAGGTTAGACAAGTGCAAACAGCTCCAAAGGCTTCCAGACTCCATTGGAAATTTGAAATCTTTGCGATGGCTAATGATGAAGGAAACAGCACTTACACGACTACCAGATAGCTTTGGAATGCTCAGAAGCCTGGTAGAACTAGACATGAAAAGAATGCCCTATCTTAATGGGGCTGGAAACAACATGTCTACAGGGACAATTATTCCTGAAATACGAGAACAACCTAGTTCAGAGGCAATATTAACTTCTTTTTGCAATCTAAGCTTGCTGGAAAAGCTAAATGCTCATGGATGGGGAATATATGGAAAAATTCCAGATGAGTTTGAAAAGCTATCATCACTAGAAACTTTAAGTTTAGGTCACAACAATATTTGCAGTCTTCCAGCCAGCATGACGGGTCTCTCCTGTCTCAAAAAGCTTTTGTTGTCAGATTGCAGGGAGCTCATGTTTCTGCCTCCTCTTCCCTCTAGCCTAGAAGAGCTAAATCTGGAAAACTGTGTTGCAGTGCAGTACATACATGATATTTCAAACTTGGAGCGATTAGAGGAGTTCAACCTTACAAATTGTGAAAAGGTGGTGGATGTCCCAGGTCTTGAACATTTGAAGTCCTTAAGAAGGTTGTACATGAGTGGTTGCATTGGATGCTCCCTTGCCGTAAAGAGAAGATTTTCCAAGGTTCTACTTAAGAAATTAGAGATTTTGATTATGCCTGGAAGCAGGGTCCCGGATTGGCTTACAGCAGAACCAGTAGTGTTTTCCAAGAGAAGCAATAGGGAGCTCAAAGGTGTTATTTTTTTTGGCGTTATCTCTTTCAAGAACATACCTGAAAACCAAAGGGAAGGACTGGAGTTAGTGGATGTTCAAGGAAAAATCTTTAATTTGACCAGTGAGGTGTTTAGCACAACGTTTCGCCTGCTAAGAGTACCCAGAACAAATGAAGACCACATATTTTTGCGCAGATTCGGTGCTCGAACTCCGTTAGTCTTTCAGTTAAAAGATAGGTATACCTTACATTTGCAAAGGCGAAACCCTCCTCGTATTGAGAGGTTGGAGCTCAATAACTGCAGAATTCATTTAGTTTTTTATGGTGACGATGATTACGAGGGAGACGAAGGATCACTTGAAGAAAGTCAATACTCTGTTTCACAAAAATTAGCCAAGTTCTTCAACTTTGCTGCAGACGATCCAGGCGTGTGA 4155 0.4291 MPLESDVTISSYRLCWDVFLSFRGTHTGHTFTMRLYHALHGRGVRVFRNDDGLERRGEIQKKLLEAVEDSAAAVVVISPDYASSHWCLEELAKICEVGRLILPVFYWVDPSHVRKQEGPFEEWFVWHAQRFPTERVEQWRDAMKKVGGLAGFVLDEKSDGDKSDELIQILVQNLMKQLRNTPLSVAPFTVGLDDRVEVLKNLLDLKSNDVRVLGLYGMGGVGKTTLAKSLFNNLVVHSFERRSFIPNVRSQVSKHHGLVSLQNKIHGDLCGRKEDLITDVSDGISAIQKIVQENRVLLILDDVDDVEQLNFLMGKREWFYKGSRVVITTRDKEILHGSYVDVDFEVKELEFSEAMELFCFHAIRRKEPAEGFLDVSKQIVEKTGGLPLALEVFGSFLFDKRTEREWKDALEKLKQIRPPCLQEVLKISFDALDEQKQCIFLDIACLFVQMEMKRDDVVDILNGCDFRGEIAVAVLTARCLIKIIGDGKVWMHDQVRDMGRQIVRSESLTDPGLRSRLWDRDEILTVLKNMKGTRNVQGVVLDCVKRRMSIPRDRSADEITRENFRRKPSCKSAFEYIKERYKKYVEDRKEKAKEVILQSKHFQPMVSLRMLQINYSRLEGQFICLPPKLKWLQWKQCSLRYMPSSYNPLELAVMDLSESLIETLWKGRSNKVAVHLTVLNLSRCHRLTATPDLSGYLSLKKLNLEECSHLTRIHESLGNLNSLVHLNFRLCYNLIELPSDVSGLKHLEDLVLSDCWKLKTLPKDLSCMVSLRQLLLDSTSITELPLSIFHLTKLEKLSANGCHLLKKLPTCTGKLCSLQELSLNHTALEELPDSVGSLEKLEMLSLTGCKSLSVIPNSTGKLISLTQLYLDGSGIKELPASIGALSYLRKLSVGDCTSLDKFPVSMEALVSIVELKLDGTKVSNFPDEIFVGMKMLEKLEMGKVQHLKFVPVSLGYLSALTILDMHDANITELPESIGMLENLIRLRLDKCKQLQRLPDSIGNLKSLRWLMMKETALTRLPDSFGMLRSLVELDMKRMPYLNGAGNNMSTGTIIPEIREQPSSEAILTSFCNLSLLEKLNAHGWGIYGKIPDEFEKLSSLETLSLGHNNICSLPASMTGLSCLKKLLLSDCRELMFLPPLPSSLEELNLENCVAVQYIHDISNLERLEEFNLTNCEKVVDVPGLEHLKSLRRLYMSGCIGCSLAVKRRFSKVLLKKLEILIMPGSRVPDWLTAEPVVFSKRSNRELKGVIFFGVISFKNIPENQREGLELVDVQGKIFNLTSEVFSTTFRLLRVPRTNEDHIFLRRFGARTPLVFQLKDRYTLHLQRRNPPRIERLELNNCRIHLVFYGDDDYEGDEGSLEESQYSVSQKLAKFFNFAADDPGV 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01335 1384 ProSiteProfiles TIR domain profile. 14 178 IPR000157 GO:0007165
Vian10g01335 1384 Gene3D - 349 433 IPR042197 -
Vian10g01335 1384 SUPERFAMILY L domain-like 930 1226 - -
Vian10g01335 1384 SMART till_3 15 149 IPR000157 GO:0007165
Vian10g01335 1384 Gene3D Ribonuclease Inhibitor 852 1049 IPR032675 -
Vian10g01335 1384 Gene3D Ribonuclease Inhibitor 1057 1231 IPR032675 -
Vian10g01335 1384 SUPERFAMILY L domain-like 490 942 - -
Vian10g01335 1384 ProSiteProfiles Leucine-rich repeat profile. 1099 1120 IPR001611 GO:0005515
Vian10g01335 1384 Gene3D - 14 174 IPR035897 -
Vian10g01335 1384 PRINTS Disease resistance protein signature 290 304 - -
Vian10g01335 1384 PRINTS Disease resistance protein signature 383 397 - -
Vian10g01335 1384 PRINTS Disease resistance protein signature 836 852 - -
Vian10g01335 1384 PRINTS Disease resistance protein signature 212 227 - -
Vian10g01335 1384 Gene3D - 175 342 IPR027417 -
Vian10g01335 1384 Pfam NB-ARC domain 195 415 IPR002182 GO:0043531
Vian10g01335 1384 Pfam TIR domain 16 182 IPR000157 GO:0007165
Vian10g01335 1384 Gene3D Ribonuclease Inhibitor 544 755 IPR032675 -
Vian10g01335 1384 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 810 IPR044974 GO:0006952
Vian10g01335 1384 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 152 IPR035897 -
Vian10g01335 1384 SMART LRR_typ_2 909 932 IPR003591 -
Vian10g01335 1384 SMART LRR_typ_2 862 885 IPR003591 -
Vian10g01335 1384 SMART LRR_typ_2 957 980 IPR003591 -
Vian10g01335 1384 SMART LRR_typ_2 1004 1026 IPR003591 -
Vian10g01335 1384 SMART LRR_typ_2 1097 1120 IPR003591 -
Vian10g01335 1384 SMART LRR_typ_2 768 791 IPR003591 -
Vian10g01335 1384 SMART LRR_typ_2 815 838 IPR003591 -
Vian10g01335 1384 Gene3D Ribonuclease Inhibitor 756 851 IPR032675 -
Vian10g01335 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 443 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01335 Vian-Chr10 22703187 22708668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01335 723 960 WRKY Transcription Factor Family AT4G12020 30.769 2.67e-10 63.5