Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01331 ATGTCTCGCACGTGCTCACAGTGCGGGAACAACGGCCACAACTCAAGGACATGCACCGACGGTGGTGCTGCTGTTTCCGGCGGCTCGTCTCCCCGGGAGAGCGGCTTCATGCTGTTTGGCGTGCGAGTCACCGAGGGAATTTCCTCCTTCAGGAAGAGCGCTAGCATGAACAACCTCTCTCAATACGACGCCGATTCCAACACAGCCGACGCCGGGTACGCCTCCGACGACGTCGTTCACGCCTCCGGTCGCGCGCGCGAGCGCAAGCGAGGTGTTCCTTGGACGGAGGAAGAGCACAGACTGTTCCTGTTAGGGTTGCACAAAGTTGGAAAGGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAAACTCGCACGCCAACTCAGGTCGCCAGTCACGCTCAGAAGTACTTCCTCCGTCGCCACAACCAGAACCGCCGCCGCCGGAGATCTAGCCTCTTTGACATCACTACCGATACGGTGATGGAGTCTTCTACTATAATGGAAGAAGAACAAGTTCAGCAGGAAACGGCGGCGCTGCCTATCCCCGCAGCATATCCGCCGTCGCATTACGGCGGTTTGCCTGGCGCAGGTTTTCCGATGAGTCTATCTCCAGTGGTTTTGCCGGCGAGCAGTGAGAGGCTAGCCAAGCCGATTAGGCCGACGCCGATTTTGCCGGTCCCACCGTCGTCGAAGATGGCTAGTTTGAACTTGAAAGAGAAAGCTTCTCCGACTAATCTCATAGAGCCTTTACCGTTGTCGTTGAATCTTCCATCGCCGACGCCGCGGTCACAGGATCAGTCACCGGCGAGTAGTGACCACTCATCGCCGTCGTCGTCATCATCGGCTTTTCAGGTGATTTCTGCTGGGAAGTTCGGCGGCGGTGGGGACAGTATCATCAGCGTTGCTTGA 912 0.5691 MSRTCSQCGNNGHNSRTCTDGGAAVSGGSSPRESGFMLFGVRVTEGISSFRKSASMNNLSQYDADSNTADAGYASDDVVHASGRARERKRGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQVQQETAALPIPAAYPPSHYGGLPGAGFPMSLSPVVLPASSERLAKPIRPTPILPVPPSSKMASLNLKEKASPTNLIEPLPLSLNLPSPTPRSQDQSPASSDHSSPSSSSSAFQVISAGKFGGGGDSIISVA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01331 303 PANTHER TRANSCRIPTION FACTOR KUA1 1 247 - -
Vian10g01331 303 SMART sant 90 140 IPR001005 -
Vian10g01331 303 CDD SANT 93 138 IPR001005 -
Vian10g01331 303 FunFam transcription factor MYB1R1 92 143 - -
Vian10g01331 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Vian10g01331 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Vian10g01331 303 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Vian10g01331 303 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Vian10g01331 303 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Vian10g01331 303 MobiDBLite consensus disorder prediction 1 24 - -
Vian10g01331 303 Gene3D - 92 143 - -
Vian10g01331 303 MobiDBLite consensus disorder prediction 243 283 - -
Vian10g01331 303 MobiDBLite consensus disorder prediction 258 283 - -
Vian10g01331 303 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
Vian10g01331 303 MobiDBLite consensus disorder prediction 1 30 - -
Vian10g01331 303 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01331 Vian-Chr10 22628810 22630108 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian10g01331 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01331 - - var:108322503 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01331 10 22628810 22630108 Vian10g01331 10 22628810 22630108 ECH
Vian10g01331 10 22628810 22630108 Vian10g01331 10 22628810 22630108 PCT