Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01324 ATGAAGAGGTCTAGAGATGAAGTTTTCACTAGTTGTTCTCAACTCAAACGGCCTGTGGTGTCTGCCCGAGGAGAAGCGTCTGGGCAACCGCAGATGGCAAATGGAGGTGCTCAGAAATTGACAACTAATGATGCCCTAGCATATCTTAAAGCAGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGACGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACCGCGGGTGTCATTGGAAGAGTGAAGGAACTCTTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGGTATGAAATCACACTTCCGTCAGAGGATGAACAACCTGCTCCAAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATAAAGACTCGTTTTCAAGGCGACGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACCGAGGTCTACCAGGAGGTTGCTGCTATTTTCCAGGACCATCCTGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACGCTTCTGCAGCTGCCTCTACTCATTATGCGTCTGCAAGAAATTCTATTCTTCGTGATAGGAGTTCAATGCCAACAGTACGGCCAATGCATGTTGAAAAGCGAGAAAGGACCATGGCTTCACATGGGGATCGTGATCCCAGTGTTGATCGTCCTGATCCAGATCAGGACAGAGGTTTATTAAGGATAGAAAAGGAGAGGAGACGTGCGGAGAAGGAAAAGGAACGCAGAGAAGATAGAGACAAGAGAGAACGTGAAAAGGATGATAGAGATTATGAGCATGATAGGGAGCGATTTCCTCACAAACGTTCTCGTAAGGTTGAGGACTCTGGAGCTGAACCATTGCTTGATGCTGATGAAAATTTTGGTACGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTCGCTTTCTGCGAAAAAGTCAAAGAAAAATTACGAAATCCTGATGACTATCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAAGTATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTACAATCTGAAAAAAATGATGGTGGATTTCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATGAAGGGTGAAGAAAGGGAAAGAGAAAGGGATCGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGATCGTGAGTTCCGAGAACGGGATAAATCCACTGTGATTGCCAACAAAGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATTTATCAAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGTACTCCTAGTTATCGGCTCTTACCAAAAAATTACCCAATACCTATAGCTAGCCAAAAAACAGAACTTGGTGCTGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTACTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTGAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAATAATACAATTAAAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATTGAACGATTATACGGTGATCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAACAGAAACAGGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATTCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAGCAGGATACAAAAAGCCTTAGCACCAAAGCCTTGCTGGCAGAAATCAAAGAAATTAGTGAAAAGAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAACAGACGGCCAATTCTTCCAAACTTGGAGTTTAAGTATTCTGATCTAGATATTCATGAAGATTTATATCAGCTCGTAAAATATTCCTGTGGAGAAATTTGCACAACCGAACATGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAGCCCATGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCAGAGGATACGGAAGATGTTGTCAAGACTAAGAATAATAGTGTCAAGAATGGCACTGCGAGTGTTGCTGAAAGTGATGGTAACCCTGTTGTGGGTGCTACCGTCATGAATCAAAAGCATATAAATGTTTCCAGAAATGGGGATGGTTGTTTGCCAGTAGATCAGTCAACTTCTAGTAAAGCATGGCAATCAAATGGTGATAGTGGGGTTAGAGAGGATAGGTATCTTGACGACCGTGTATTACATAAAACTGAAACTTTGGGAAATAATACACAGCATGGTAAAATGAATAATATTGCTTTCCCACCTAATGAACTATCAGGATTTAATAATAAGCAAGACCAGTCTAGTGAAAGGTTAGTGAATGCTAATGCCTCCCCCACATCTGGAATGGAACAAAGCAATGGAAGGACAAACATAGATAATTTGTCAGGACTCACTGCCACTCCAGCTAGACCTGTTAATGCATCTGCTGAAGGAGGACCTGATATTCCACCTTCAGAGGGTGGTGATTCTGCAAGACCAGGTACATCCACAAATGGGGTCATCACTGGAGGCACCAAAGTCCACCGGTACCAAGAGGAATCAATTCGACCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAAGATAACTTTGCAGTTTATGGAGGTAATGGTTTGGATGCAGTGCATAAAGGAAAGGATGGTGGTATTAGTCGGCCATATCAAGATAGACATGGGGACGATGTTTGTGGTGAAACTAGAGGAGAAAATGATGTTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGCAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGGGAAGAGCATGAGGATGGAGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCTGATGCCCATGACGTTGAAGGAGATGGAATGTCATTGCCGTACTCTGAACGCTTTCTCCTAACTGTGAAGCCACTGGCAAAGCATGTTCTTCCAATGTTACATGAGAAGGACAGGAATTCACGAGTTTTCTATGGAAACGATTCCTTTTATGTTCTTTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCGAAGATTAACTCATCATCTGCTGATAGGAAATGGAAAGCTTCGAGTGATACAAGCTCCACTGATCAATATGACAGATTCATGAATGCCCTTTTCAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAATTGGAATTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTCGTTAAACAGCTTCAAGCTGTTGCTGCTGATGAGATGGATAATAAACTTCTACAACTACTTGCATATGAGAAATCAAGAAAACCTGGAAAATTTGTCGACATAGTTTATCATGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTATTGAATATTCACCTGGAGCAACGAAACTATCTATTCAACTGATGGACTCTGGACATGATAAACCCGAAGTGACTGCTGTTTCGATGGACCCTAATTTTTCAACCTATCTACTCAATGACTTCCTGTCTGTTGTCCCTGACAAAAAAGAGAAGTCAGGGATTTTCTTGAAAAGGAATAAACGTAGATATGCTGGTAGTGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAGATTATTAATGGTCTGGAGTGCAAGATAGCTTGCAGTTCATCTAAGGTCTCTTACGTTTTAGATACTGAAGACTTTTTGTATCGGGTGAGAAGGAAACGAAGAGTCTTGCATCCGAGGAGTTCAGGCACCCATGAACAGGCACAGTCTTCAAACATTCGTTCAAGAAGACTGCAACGATTCCGCAACATGTTTTCCATTACATGA 4281 0.4074 MKRSRDEVFTSCSQLKRPVVSARGEASGQPQMANGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIGRVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSILRDRSSMPTVRPMHVEKRERTMASHGDRDPSVDRPDPDQDRGLLRIEKERRRAEKEKERREDRDKREREKDDRDYEHDRERFPHKRSRKVEDSGAEPLLDADENFGTRPMSSTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQMKGEERERERDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGSKMSLYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPIASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKGDIPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFKYSDLDIHEDLYQLVKYSCGEICTTEHVDKVMKVWTTFLEPMLCVPSRPQGAEDTEDVVKTKNNSVKNGTASVAESDGNPVVGATVMNQKHINVSRNGDGCLPVDQSTSSKAWQSNGDSGVREDRYLDDRVLHKTETLGNNTQHGKMNNIAFPPNELSGFNNKQDQSSERLVNANASPTSGMEQSNGRTNIDNLSGLTATPARPVNASAEGGPDIPPSEGGDSARPGTSTNGVITGGTKVHRYQEESIRPFKSEREEGELSPNGDFEEDNFAVYGGNGLDAVHKGKDGGISRPYQDRHGDDVCGETRGENDVDADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVKPLAKHVLPMLHEKDRNSRVFYGNDSFYVLFRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALFSLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLLAYEKSRKPGKFVDIVYHENARVLLHDENIYRIEYSPGATKLSIQLMDSGHDKPEVTAVSMDPNFSTYLLNDFLSVVPDKKEKSGIFLKRNKRRYAGSDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLYRVRRKRRVLHPRSSGTHEQAQSSNIRSRRLQRFRNMFSIT 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01324 1426 MobiDBLite consensus disorder prediction 965 983 - -
Vian10g01324 1426 Pfam C-terminal domain of Sin3a protein 1139 1385 IPR031693 -
Vian10g01324 1426 MobiDBLite consensus disorder prediction 859 925 - -
Vian10g01324 1426 MobiDBLite consensus disorder prediction 946 960 - -
Vian10g01324 1426 MobiDBLite consensus disorder prediction 208 327 - -
Vian10g01324 1426 Pfam Sin3 family co-repressor 496 587 IPR013194 -
Vian10g01324 1426 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Vian10g01324 1426 MobiDBLite consensus disorder prediction 422 454 - -
Vian10g01324 1426 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Vian10g01324 1426 MobiDBLite consensus disorder prediction 820 845 - -
Vian10g01324 1426 MobiDBLite consensus disorder prediction 820 840 - -
Vian10g01324 1426 ProSiteProfiles PAH domain profile. 329 398 IPR003822 GO:0006355
Vian10g01324 1426 PANTHER SIN3B-RELATED 38 1283 IPR039774 GO:0003714
Vian10g01324 1426 Pfam Paired amphipathic helix repeat 351 395 IPR003822 GO:0006355
Vian10g01324 1426 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Vian10g01324 1426 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Vian10g01324 1426 Gene3D Paired amphipathic helix 327 399 IPR036600 GO:0006355
Vian10g01324 1426 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Vian10g01324 1426 SUPERFAMILY PAH2 domain 327 395 IPR036600 GO:0006355
Vian10g01324 1426 SMART hdac_interact2seq4b 493 593 IPR013194 -
Vian10g01324 1426 FunFam Paired amphipathic helix protein Sin3 44 106 - -
Vian10g01324 1426 MobiDBLite consensus disorder prediction 420 454 - -
Vian10g01324 1426 MobiDBLite consensus disorder prediction 1040 1054 - -
Vian10g01324 1426 FunFam Paired amphipathic helix protein SIN3 326 400 - -
Vian10g01324 1426 MobiDBLite consensus disorder prediction 1067 1092 - -
Vian10g01324 1426 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Vian10g01324 1426 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Vian10g01324 1426 MobiDBLite consensus disorder prediction 859 995 - -
Vian10g01324 1426 MobiDBLite consensus disorder prediction 218 305 - -
Vian10g01324 1426 MobiDBLite consensus disorder prediction 1008 1032 - -
Vian10g01324 1426 MobiDBLite consensus disorder prediction 1007 1092 - -
Vian10g01324 1426 FunFam Paired amphipathic helix SIN3-like protein 123 194 - -
Vian10g01324 1426 Coils Coil 252 281 - -
Vian10g01324 1426 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01324 Vian-Chr10 22492798 22503709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01324 29 143 WRKY Transcription Factor Family AT4G12020 48.718 2.22e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian10g01324 Sin3a_C 1e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01324 K11644 - gmx:100811928 2523.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01324 10 22492798 22503709 Vian10g01324 10 22492798 22503709 ECH