Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01318 ATGGACACAGACGCCGTCGTTTCCTTTGATCATGTCTCGCCGGAGGATTCTCACGAGGTTCATGTTTTGGCTGTCGACGACAGCCTCGTTGATCGAAAGGTCATTGAACGCTTGCTCAAAATCTCAGCTTGTAAAGGATTTTTTCTGGATGGAAAAATTGCAGTTACAGCTGTGGACAGTGGAATCAGAGCACTGCAATTTCTGGGGTTGGACGAGCAGAGAAGGACCTCTGAATCTGATGGTTTTGTCCCGAGTTTGAAGGTGGATCTAATTATCACAGACTACTGCATGCCCGAGATGACAGGTTATGAATTGCTCAAGAAAATAAAGGAATCGTCCATGTTCAGGGAAATTCCAGTAGTGATTATGTCTTCCGAAAACGTTTTGCCTCGCATAGACAGATGCTTGGAGGAAGGTGCAGAGGATTTCATAGTGAAACCAGTGAAATTATCTGACGTGAAACGGTTGAAGGGTTACATGACAACGAAAGAGGTTAAGGTTGGAAGCCATGACAGAGGAAGCGGTGTTGAGATTAACAACAAAAGAAAGCTGGAAGAAGAGGAAGAGACCTCTGACATGTCATCATCGCCACCGTCCATTTCTACACTTTCATCATCACCGTCCGTTTCTTCACCATCATCTTCTCCTACATCTTCACCCACCGTTCTCGCTTCTCCAATCAGACGGCTTAAAATGAGCACCACGGATTGA 711 0.4543 MDTDAVVSFDHVSPEDSHEVHVLAVDDSLVDRKVIERLLKISACKGFFLDGKIAVTAVDSGIRALQFLGLDEQRRTSESDGFVPSLKVDLIITDYCMPEMTGYELLKKIKESSMFREIPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKGYMTTKEVKVGSHDRGSGVEINNKRKLEEEEETSDMSSSPPSISTLSSSPSVSSPSSSPTSSPTVLASPIRRLKMSTTD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01318 236 Gene3D - 20 205 - -
Vian10g01318 236 MobiDBLite consensus disorder prediction 193 236 - -
Vian10g01318 236 SMART REC_2 20 160 IPR001789 GO:0000160
Vian10g01318 236 MobiDBLite consensus disorder prediction 166 236 - -
Vian10g01318 236 ProSiteProfiles Response regulatory domain profile. 21 161 IPR001789 GO:0000160
Vian10g01318 236 MobiDBLite consensus disorder prediction 166 190 - -
Vian10g01318 236 Pfam Response regulator receiver domain 22 153 IPR001789 GO:0000160
Vian10g01318 236 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 204 IPR045279 GO:0009736
Vian10g01318 236 CDD REC_typeA_ARR 22 156 - -
Vian10g01318 236 SUPERFAMILY CheY-like 20 155 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01318 Vian-Chr10 22383212 22384340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01318 14 228 Response Regulator Gene Family AT1G59940 57.658 9.61e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian10g01318 Response_reg 1.3e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01318 K14492 - gmx:100779833 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01318 10 22383212 22384340 Vian10g01318 10 22383212 22384340 ECH