Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01305 ATGGAGGCTTTCATGTCCTCCTCCGATCTCTCCTCCATATGGCCTCCGCCGGCGCCGCCGCAATCCGCCGCCGTCTTCAACCAGGACACCCTCCAGCACCGCCTACAGGCCCTCATCGAGGGCGCCAGAGAGAGCTGGACCTACGCTATCTTTTGGCAGTCCTCCTATGACTATTCCGGCTCCACGCTCCTTGGCTGGGGCGACGGTTACTACAAAGGCGACGATGACAAGGCCAAGGCCAAGGCCAAAGCTAAAGCCACCTCCGCCGCCGAGCAGGACCACCGCAAGAAGGTCCTCCGGGAGCTCAACTCCCTCATCTCTGGCTCTTCAGCTACCGCCTCCGATGACGTAGACGAGGAGGTCACAGACACCGAGTGGTTCTTCCTTGTTTCCATGACCCAGTCCTTCGTCAACGGCGCCGGCTTGCCCGGCCAGGCCTTCTTCAATTCCAACCCCGTCTGGGTCACCGGTGGCGACCGCCTCTCCTCCTCCCCCTGCGAGAGAGCCCGCCAGGGACAAGTCTTTGGCCTCCAAACCCTAGTCTGCATACCCTCCGCAAACGGAGTCGTTGAACTGGGGTCTACCGAATTAATTTACCAGAACCCGGATCTGATGAACAAGGTGAAGGTCCTCTTCAATTTTAGCAACAACAACTTCGACATGGGTTCTTCTTGGCCTGCAACCAGCGCCGATCAAGGAGAAAACGACCCCTCCACGCTCTGGCTCAACGATCCTGAAGTTAGGGATTCCATTAACACTGTCGCAGCTACTCCTTCTGTATCCGTTTCTGTTCCCCCTCATAACAGTACTCACGGGATTTCAAAGACGATGCAGTTGGAGAGTTCTATTCAAACCCCCGGTTCCAGTACCTTAACTGAAACCCCAAGCTCTATCCACGCTGTTCCACAGAACCAGAGCGTGTTCTCCAGAGAATTGAACTTCTCTGAGTACGGTTTTGATCCCAAGAGTGGCAACACTAACAATCAGCATTCCCTGAAGCCCGAATCCTGCGAGATTCTCAGCTTCAGCGATAGCAAGAGAACCTCTTACGGGGGCGGGGGCGGGGCCGGGGCCGTCAATGGTAATTCCAATTCCAATTCAAATTTCTTCTCTGGTCAATCACCGTTTGTTGCTGTTGCGGATGAGAACAACAATAACAACAACGGGAAGAGAAGGTCACCGAATTCGCGAGGCAGCAACGACGACGGAATGCTTTCGTTCACCTCCCGCGCGATTCTTCCGGTCACTAATTTGAAGTCTGCCGGTGGCGGTGATTCCGACCACTCGGATCTGGAAGCGTCGGTGGTAAAGGACCCTGTGGTGGAGCCGGAGAAGCGGCCCCGGAAGAGAGGGCGGAAGCCGGCGAACGGAAGAGAGGAACCGTTAAACCACGTGGAAGCGGAGAGGCAGAGGAGGGAGAAGCTGAATCAGAGGTTCTACGCGCTTCGTGCTGTGGTTCCCAACGTGTCCAAGATGGACAAAGCGTCGCTTCTGGGTGACGCAATATCTTACATTACGGAGCTGAAGTCCAAGCTTCAAACTCTGGAATCAGATAAAGATGGGTTGCAGAAGCAACTTGAAGGAGTGAAGAAGGAACTCGAGAAATCAAGTGATAACTCTAATCACATGAAACACGCGGGTAATGGTAACATTAAGTCGGCTAATCAGGCGTTGATTGACTTGGACATCGACGTGAAGATTATTGGGTGGGACGCGATGATAAGAATCCAATGCAGCAAGAAGAACCACCCCGCGGCGAGGTTGATGGCGGCGCTGATGGAGTTGGACTTGGACGTTCACCACGCCAGCGTGTCGGTGGTTAACGATTTGATGATTCAACAAGCGACGGTGAAGATGGGGAGTAGGTTTTACACGCAGGAGCAGCTTCGTTTGGCCCTGTCGGCTAAGGTTGGGGATGTACGCACTTTGCGGCGTTGA 1938 0.5454 MEAFMSSSDLSSIWPPPAPPQSAAVFNQDTLQHRLQALIEGARESWTYAIFWQSSYDYSGSTLLGWGDGYYKGDDDKAKAKAKAKATSAAEQDHRKKVLRELNSLISGSSATASDDVDEEVTDTEWFFLVSMTQSFVNGAGLPGQAFFNSNPVWVTGGDRLSSSPCERARQGQVFGLQTLVCIPSANGVVELGSTELIYQNPDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSTLWLNDPEVRDSINTVAATPSVSVSVPPHNSTHGISKTMQLESSIQTPGSSTLTETPSSIHAVPQNQSVFSRELNFSEYGFDPKSGNTNNQHSLKPESCEILSFSDSKRTSYGGGGGAGAVNGNSNSNSNFFSGQSPFVAVADENNNNNNGKRRSPNSRGSNDDGMLSFTSRAILPVTNLKSAGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDGLQKQLEGVKKELEKSSDNSNHMKHAGNGNIKSANQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALSAKVGDVRTLRR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01305 645 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Vian10g01305 645 Pfam Helix-loop-helix DNA-binding domain 463 508 IPR011598 GO:0046983
Vian10g01305 645 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 528 IPR036638 GO:0046983
Vian10g01305 645 CDD bHLH_AtAIB_like 456 532 - -
Vian10g01305 645 MobiDBLite consensus disorder prediction 379 405 - -
Vian10g01305 645 Coils Coil 505 539 - -
Vian10g01305 645 SMART finulus 465 514 IPR011598 GO:0046983
Vian10g01305 645 MobiDBLite consensus disorder prediction 1 21 - -
Vian10g01305 645 MobiDBLite consensus disorder prediction 430 469 - -
Vian10g01305 645 Gene3D - 451 540 IPR036638 GO:0046983
Vian10g01305 645 MobiDBLite consensus disorder prediction 418 469 - -
Vian10g01305 645 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 31 212 IPR025610 -
Vian10g01305 645 PANTHER MYC 1 636 IPR045084 GO:0003700|GO:0006355
Vian10g01305 645 FunFam Transcription factor bHLH13 452 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01305 Vian-Chr10 22162644 22164581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01305 1 638 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.949 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g01305 bHLH-MYC_N 4e-56 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01305 K13422 - gmx:100790168 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01305 10 22162644 22164581 Vian10g01305 10 22162644 22164581 ECH