Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01293 ATGTCGCCGCCGGCGGTGGTAACGGAGGAGGATGGGCTGAGCAAGGTGTCGTCGACTGTAGCGTCTGGTTCTTCGCAGTCCTTGGATTGTTTCTCTCAGAATGGGGCTGGATTGAAAGAAAGGAATTACTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGTGCATCTACTGTGCCAGGCTTGGGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACGGAGTTGAGGCTGGGTCTTCCCGGGTCACAGTCACCTGAAAGGGATCCTGATCTTTTCTCTTTAAGCTCAGCAAAGCTCGACGAGAAGCCACTGTTCCCATTAGTTCCTACTAAAGACGGGATTTGCTTGTCGTCCCAGAAAACTGTTGTTTCCGGCAACAAGAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTTACTGGTAATAAGGGGATGAACGCAATGCTGTCACCTAGGCCTTCTTGTGCTCAGCCTTCTGCAATGAAAGAAATTCCAAGCAAGTTGCAAGAACGGCCTTGTTCAGCTAATAATGGAACCGGTCATAACCATACAGGTGCTTCTATAAGTGGCAGTGCACCGGCTTCTAAGGCACAGGTTGTCGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCCACTACATCCAACAAGAACAATGATGAAGTGGATGGAAAACCAGGTGGTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAAGTAGATCTAAGAAGTTATTCAACATATCAGGAGCTATCTTCTGCACTTGAGAAAATGTTCAGCTGTTTTACCTTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGTAAGCTGAGGGATCTTCTGCACGGTTCAGAGTATGTCGTCACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCCTGGGAAATGTTCATTGATACTTGCAAAAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCCAAAAGCAGGACTTAA 1074 0.4693 MSPPAVVTEEDGLSKVSSTVASGSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPGLGDEKKENMNLKATELRLGLPGSQSPERDPDLFSLSSAKLDEKPLFPLVPTKDGICLSSQKTVVSGNKRGFADTMDGFSQGKFTGNKGMNAMLSPRPSCAQPSAMKEIPSKLQERPCSANNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTSNKNNDEVDGKPGGGALFVKVSMDGAPYLRKVDLRSYSTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVVTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01293 357 MobiDBLite consensus disorder prediction 1 26 - -
Vian10g01293 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 70 344 IPR003311 GO:0005634|GO:0006355
Vian10g01293 357 MobiDBLite consensus disorder prediction 175 199 - -
Vian10g01293 357 MobiDBLite consensus disorder prediction 12 26 - -
Vian10g01293 357 FunFam Auxin-responsive protein 232 349 - -
Vian10g01293 357 Gene3D - 234 351 - -
Vian10g01293 357 Pfam AUX/IAA family 75 348 IPR033389 -
Vian10g01293 357 ProSiteProfiles PB1 domain profile. 237 341 IPR000270 GO:0005515
Vian10g01293 357 SUPERFAMILY CAD & PB1 domains 234 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01293 Vian-Chr10 21950114 21953578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01293 239 342 B3 DNA Binding Superfamily AT5G37020 32.692 5.90e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian10g01293 AUX_IAA 1.4e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01293 K14484 - gmx:547502 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01293 10 21950114 21953578 Vian10g01293 10 21950114 21953578 ECH
Vian10g01293 10 21950114 21953578 Vian1g02091 1 25390231 25392950 PCT