Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01290 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTGCTTGCTCCAAGAAAAGACACTTGGAGTGCTTTGTCTACTGGGTTGAATGAGTTACTTCCTAGTGCTTGGAGCTTTGACTCTTTTGATGAGAACCAGGGTTTAGCAACTTTGAATCCTTCATTTGCTGCATTTTCAACCCCACTAGACCACAGGTTTGAATGTCCTTATGGAAGTGAAGCAACCCACCCTTTTGTTGATGAGTTCTCATTGCCAGAGCTTGAATCATTATACACCAGAAATGATGAGTCAGCACCAGTTCTCCCACAAGAAGATAACCCATCATTGGAGGATGAAGAGTTTGGCTTTCTGGGAAGTGATAACCAGAGTTTGGAGCAAGCAAAAAATGGCTGCAAAATTGAGGAACAATTGACAGAGATTCCAGTCTTCAACATGGGTTTGTGTGCAGAGAAAAAGCTCAAATCCAAAAAGCTGGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCGAAGATTAGCAAGATGGACAGGACCTCCATTCTCGGAGACACCATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAATGGAGGAGGGAACAAATCATATAAACCTCTTGGGCAATTCTAAGGAGCTAAAGCCAAATGAAGCAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGAAGACAGCATGACACAAGGATTAGCATCTGCTGTGCTACAAAGCTGGGATTACTCCTGTCCACAGTGAATACCCTAGAAGCATTAGGCCTTGAGATTCATCAGTGTGTTATAAGCAACTTCAATGATTTTTCAATGCAAGCAACCTGCTCTGAGGCAGCTGAGCAGAGAAATTGTACGAGCCCGGAAGATATAAAGCAAGCATTATTCAGAAATGCAGGTTATGGTGGAAGATGTCTGTAA 996 0.4267 MELSQLGFLDELLAPRKDTWSALSTGLNELLPSAWSFDSFDENQGLATLNPSFAAFSTPLDHRFECPYGSEATHPFVDEFSLPELESLYTRNDESAPVLPQEDNPSLEDEEFGFLGSDNQSLEQAKNGCKIEEQLTEIPVFNMGLCAEKKLKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNHINLLGNSKELKPNEAMVRNSPKFDVERRQHDTRISICCATKLGLLLSTVNTLEALGLEIHQCVISNFNDFSMQATCSEAAEQRNCTSPEDIKQALFRNAGYGGRCL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01290 331 Pfam Helix-loop-helix DNA-binding domain 164 207 IPR011598 GO:0046983
Vian10g01290 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 218 IPR036638 GO:0046983
Vian10g01290 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Vian10g01290 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 75 325 - -
Vian10g01290 331 SMART finulus 164 213 IPR011598 GO:0046983
Vian10g01290 331 Gene3D - 149 223 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01290 Vian-Chr10 21909698 21911113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01290 149 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 69.022 4.55e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g01290 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01290 - - gmx:100806571 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01290 10 21909698 21911113 Vian1g02095 1 25508610 25509965 PCT