Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01279 ATGGCAGCGAAAAAAAAAACTAGAAATGAAAACGGCGTCGTCGCGTTACCAAGGGTTATTCACAAACTCACTCAGGCCCTTCTTCTTCATCAGTCATGGAAAAAGAAGGTAGGGTTCTGTTCTTTGTTCGCCGTTGACGGCTGTAATTGCCTTCTGGATCTGTCGGAGATCGAGAAGGTTCTGATGGATATCAAAGCTGACGACGTTAAGGTGATACCGGTTCCCAAGCACTGCGATTGGGCCGATTTCATGGTTCTCGCCACTGGCAGGTCCACCTGGCACGTCAACAACATAGCCCAAGCCCTAATTTACAAGGCACCACACCCTCCTTCCTTCGTGGACCTGCCAGTGGCGAGAACCATGAAATCGGCCCAATCGCAGTGCTTGGGAACCGGTATCACCTTAACGTCGTCAGCTTTGATATCCATCAGAACCTTCTCGATCTCCGACAGATCCAGAAGGCAATTACGGCGGACAAAGAACATAACCCTACCTTCTTCTTCCATGGTTGATGAAGAAGAAGGGCCTTTGAATATCACAAACACTCCAGATGGAAAACTTCTTGTGTTTTTATCTGCAAGAAGTGCTGTGGACTCTGGAGTGCATAATGCTACAAATTCACTTCACAGAATTGATTGGCTAACTAATGGAAAACCTTTCCAATCTTCCAAAATTGACGACATGTCTTTTCAATCAATTTTGGAGATTCCTGTTGTGATGTGCGCTGAAGACGGTTGCTTCCCTGGGCTTTATTGTACCATTATTCATAGTAATCCTTGGTTATCTGACAATTGCACAATGATTATATCATCCATCTGGCACAGCAGTGAAGTTCTGCTCTCAGTGAATGTGCTGAGTGGGGAGATAGTACATAGCCCTGTAGATCCAAATTTCTCGTGGAATCTTCTTACGCTGGATGGGAACAATATTGTTGCCATTTCCAGTAGTCCGGTTGATTTTGCTCAAATAAGGTATGGAAAGGCCATTAAGAAGGAGACAAACAATACTACATGGAGTTGGTCAAATATATCCAGTCCAATATTCAGATGCTCTGACAAGGTTAGATCTTTGCTGTCCTCTCTCCAGTCTGGTATACTGAGGATCTCAGTTAAGGATGCTCATGCTGGTCAAACAAAAGGTTTTCAAGTTATTCCGAATCCAACTGATAAGGAACCATTGCAATCTCTTCCAGGGAATGTTGGGTCTCAGGATGTCAATGATGTTCTCTCTGCCATAGATCATGTCATCAACTTGGGTCTTGCCAGCCCATCTAAGATTACAGTAATGGGCATTTCACATGGTGGTTTTCTGACAACTCAGTTGATTGGCCAGAGGAGCATTTTTGCTGTTGGCATGATTTGTTGTGATGCCGAAGGACGATTAAATGAGAAGTCAGTCATTCTGCAGAGCAGTATTGAGCATTCTGGAGGGGAATGTGTTCGCCTTGACTTGCAACGTTTAAACCATTATTCAATTTTTCCTGGCCAGGTAGTTGGTATTGGAGGACATAATCCTAGTGGGCATTGCTTTATTGCATCTAAATTGGTGGATTCTATACCTATAATATCTGTTGCTGATGAGAATTTGAATCCTCTGAAGAAGCAAGCTATTGATAAGGAGAGTCAGTCTACTATTTATAAACAGAGAGAGTTATCGATGATTATTGCCGCTGGTCCCTTTACTACGACAGACAATTTATTGTTTGAGCCTCTTACAGAACTGCTGCAATATGCAAAACGAAGACCACCACAGTTGCTTGTATTGCTGGGACCATTTGTGGATTCTGAGCTCCCAGATACAGGAGTGGAAGATTATGTAGAGCACGTGGGTTCTGGAACACGTGTTCTTCTTGTTCCATCTATACGAGATGCTAACCATGATTTTGTGTTTCCTCAGCCCGCACTGGAAATCAATTTATCTGATTTCAAATCTCAGATAGTCAGTCTCGCTAATCCTGGAATCTTTGAGGCAAATGAGGTTAAGGTTGGTTGCTGCACCGTGGATGTTCTCAAGCAAATCAGCGGAGAAGAGATATCACGAACTGCAGCAGATGGAAAACCAATTGATCGTATGAGTAGACTTGCAAACCATATCCTCAACCAACAAAGCTTCTATCCACTTTACCCACCCGCAGAAAGTGTCCCCTTGGACTTTTCGCTTGCTCCAGAAGCCCTTAAGCTTTCATTGGTTCCGGACGTACTTATCCTACCTTCAGACATCAAGCACTTTGTCAAGGTAAAAAAAAAGTCTTCACCTCATTAG 2262 0.4355 MAAKKKTRNENGVVALPRVIHKLTQALLLHQSWKKKVGFCSLFAVDGCNCLLDLSEIEKVLMDIKADDVKVIPVPKHCDWADFMVLATGRSTWHVNNIAQALIYKAPHPPSFVDLPVARTMKSAQSQCLGTGITLTSSALISIRTFSISDRSRRQLRRTKNITLPSSSMVDEEEGPLNITNTPDGKLLVFLSARSAVDSGVHNATNSLHRIDWLTNGKPFQSSKIDDMSFQSILEIPVVMCAEDGCFPGLYCTIIHSNPWLSDNCTMIISSIWHSSEVLLSVNVLSGEIVHSPVDPNFSWNLLTLDGNNIVAISSSPVDFAQIRYGKAIKKETNNTTWSWSNISSPIFRCSDKVRSLLSSLQSGILRISVKDAHAGQTKGFQVIPNPTDKEPLQSLPGNVGSQDVNDVLSAIDHVINLGLASPSKITVMGISHGGFLTTQLIGQRSIFAVGMICCDAEGRLNEKSVILQSSIEHSGGECVRLDLQRLNHYSIFPGQVVGIGGHNPSGHCFIASKLVDSIPIISVADENLNPLKKQAIDKESQSTIYKQRELSMIIAAGPFTTTDNLLFEPLTELLQYAKRRPPQLLVLLGPFVDSELPDTGVEDYVEHVGSGTRVLLVPSIRDANHDFVFPQPALEINLSDFKSQIVSLANPGIFEANEVKVGCCTVDVLKQISGEEISRTAADGKPIDRMSRLANHILNQQSFYPLYPPAESVPLDFSLAPEALKLSLVPDVLILPSDIKHFVKVKKKSSPH 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01279 753 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 442 748 IPR016722 -
Vian10g01279 753 SUPERFAMILY alpha/beta-Hydrolases 402 634 IPR029058 -
Vian10g01279 753 SUPERFAMILY alpha/beta-Hydrolases 384 455 IPR029058 -
Vian10g01279 753 Pfam DNA polymerase alpha/epsilon subunit B 554 745 IPR007185 GO:0003677|GO:0006260
Vian10g01279 753 SUPERFAMILY Nucleotidyltransferase 56 106 IPR043519 -
Vian10g01279 753 Pfam Prolyl oligopeptidase family 397 452 IPR001375 GO:0006508|GO:0008236
Vian10g01279 753 Gene3D - 685 750 - -
Vian10g01279 753 Gene3D - 533 676 - -
Vian10g01279 753 Pfam Ribosomal silencing factor during starvation 56 105 - -
Vian10g01279 753 Gene3D Beta Polymerase, domain 2 53 124 IPR043519 -
Vian10g01279 753 Gene3D alpha/beta hydrolase 381 475 IPR029058 -
Vian10g01279 753 ProSitePatterns Prolyl endopeptidase family serine active site. 407 437 IPR002471 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01279 Vian-Chr10 21519388 21534353 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01279 444 746 Core DNA Replication Machinery Family AT1G67630 60.000 8.08e-131 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01279 K02321 - gmx:100795306 490.345