Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01272 ATGGGTAGTGTTTTCGATGAATCCCTTGTTTCCTATGTCTATGAGAATCTTCATGAGATGGAGATGCAAAAAATTAGGAGACCAATGGTTGACTACATTGAGAAAGTTCAGAAGCTAGTTACACTAACCATGAGAACAATCTTGGTGGATTGGTTAGTAGAAGTGGGTTATGCTATTGATTCTCTGTTCCACCCTAAAGAAAACAGCCTTATTCATGAAATTCCTGCAACTGTTGCGGCTGTTAAAAACCCTTCTTCTAAGCTGGCAAATAGTGTTGATATTGCATCTCTTTGTGATCCCAATCAGGATGCTGAGAGAGTAAATAACCCTGAGTGGTTTATTGTGATTGGGGTGTGCACACATCTGGGTTGCATTCCCTTGCCAAATGTTGGTTACTTTGGCGGATGGTTTTGTCCATGCCATGGTTCCCATTACAATATTTCTGGCAGAATTAGGAAGAGACCGACACTCTACAATCTAGAGATGTTGCAATTTGGCTGCAAGGAAGGGATGAAACACTTGTTCTGTAAAAGGATGGGAAGGATTTAA 549 0.408 MGSVFDESLVSYVYENLHEMEMQKIRRPMVDYIEKVQKLVTLTMRTILVDWLVEVGYAIDSLFHPKENSLIHEIPATVAAVKNPSSKLANSVDIASLCDPNQDAERVNNPEWFIVIGVCTHLGCIPLPNVGYFGGWFCPCHGSHYNISGRIRKRPTLYNLEMLQFGCKEGMKHLFCKRMGRI 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01272 182 CDD Rieske_cytochrome_bc1 87 161 - -
Vian10g01272 182 SUPERFAMILY Cyclin-like 18 60 IPR036915 -
Vian10g01272 182 Gene3D - 66 172 IPR036922 GO:0051537
Vian10g01272 182 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 81 171 IPR014349 GO:0051537
Vian10g01272 182 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 106 174 IPR017941 GO:0051537
Vian10g01272 182 SUPERFAMILY ISP domain 90 169 IPR036922 GO:0051537
Vian10g01272 182 Gene3D - 13 25 - -
Vian10g01272 182 Pfam Rieske [2Fe-2S] domain 107 161 IPR017941 GO:0051537
Vian10g01272 182 Gene3D - 26 57 - -
Vian10g01272 182 PRINTS Rieske 2Fe-2S subunit signature 136 148 IPR005805 GO:0016020|GO:0051537
Vian10g01272 182 PRINTS Rieske 2Fe-2S subunit signature 114 125 IPR005805 GO:0016020|GO:0051537
Vian10g01272 182 PRINTS Rieske 2Fe-2S subunit signature 148 160 IPR005805 GO:0016020|GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01272 Vian-Chr10 21300435 21303894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01272 10 56 Core Cell Cycle Gene Families AT1G47210 57.447 6.22e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01272 K00411 - var:108320066 237.654