Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01271 ATGGGAAGGGGAAAGATTATGATTGAAAGGATCGACAATTCCACAAGCCGGCAAGTCACTTTCTCCAAGAGGAGAAAGGGACTGATCAAGAAAGCCAAAGAGCTTGCAATCCTCTGTGATGCACAAGTTGGCCTTCTCATATTCTCCAGCACGGGAAAGCTTTACGAGTATGCCAGCACCAGGATCTCTATCATTGGCAAATGCATGCATCGGATAAAAAGTGATGTCACCACTAATTTTGATATAGACAACCTTATCAGCATGAAATCCATAATTGAGAGATACAATGCATGCAAGGAAGAACAACACCATCAGATAAATCCAGAAGCCGAAGTCAAGAACCAAGAAACTGTTTGGGACCAAAAATATTGGAAAGAGGGAAACCTTATCTTCCAGGAAAATGTGGAACTTTACAAGAAGGTGTATGGTACAACAGATTCAGCCACAACAAGCAGAAATGCATTTGTTCCACTTCCATTTGGTATGCATGCAGGAGGGCCTCCACAAGAATTAGTCCAACTTCAGTTATGCCAGCCTGAACAAGAAGCTTATGAGACATCAGACACTGCCACAAAATAA 579 0.4214 MGRGKIMIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLLIFSSTGKLYEYASTRISIIGKCMHRIKSDVTTNFDIDNLISMKSIIERYNACKEEQHHQINPEAEVKNQETVWDQKYWKEGNLIFQENVELYKKVYGTTDSATTSRNAFVPLPFGMHAGGPPQELVQLQLCQPEQEAYETSDTATK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01271 192 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian10g01271 192 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Vian10g01271 192 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian10g01271 192 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian10g01271 192 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian10g01271 192 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian10g01271 192 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian10g01271 192 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 120 - -
Vian10g01271 192 SUPERFAMILY SRF-like 2 66 IPR036879 GO:0003677|GO:0046983
Vian10g01271 192 CDD MADS_MEF2_like 2 103 IPR033896 GO:0000977|GO:0045944
Vian10g01271 192 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01271 Vian-Chr10 21279087 21288757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01271 1 192 MADS-box Gene Family AT4G37940 38.866 1.09e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian10g01271 SRF-TF 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01271 K09264 - gmx:100795778 233.417