Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01268 ATGAAATCTGTCGAATTGAAGGACAGGGATATCTCGGACAACGTTCCTCGCTCTTTTCGCCTAGGTAGATGCATGCCTGGTTATGAGCATCCTCACAAATCATTCAGAACAAGAAACACTACAATGGCTTCAACTCAAAACCCTTTCACTGTTTTCCTTATGCTCTCAGTCTTTTGCCTCTCGCTAATCTCCACAGTCAAATCAGACTCGTTTTCTTTCAACCTACCCAGTTTTGAGCCGGGTGTTAGAAGCGTACTAGTGGGTGATGATGCCAAGACAGTAGATGGAGTGTTACAACTCACCAACAAGGACACAAGCGGCAATCCAACTCAAGAAAGCGTTGGCCTGGCAGCATACTTTGGACCACTTCATCTCTCTGACGCAAAAACTGGAAGACTCGCAGACTTCGACACCGAGTTCTCCTTCGTTGTCAACACACATCGTGCGTCACTGCACGGCGACGGCTTCACCTTCTTTCTTGCATCAGTCGACTTTGATTTCCCTGACAACTCCACCGGTGGCTTCCTCGGACTTTTCAACTCCGAAACAGCATTCAACACCTCTTTAAACCAAGTGGTTGCTGTTGAGTTTGATAGCTTTGCAAATGAATGGGACCCCAACTTCCCACAGTCTGATTCTCCTCACATAGGAATTGACATTAATTCCATTAGGTCCGTGGCAACTGCCCCATGGCCACTTGATATTCAACAAGGATCAATTGGAAAGGCACGCATAAGCTATCAATCTTCCGCCAAAATATTGAGTGTCTCGGTGGCTTATTCAGATAGTTCTGTGAGTCCGAACACCGTTGTTTTATCGTATCCCATCAATTTAGGGACTGTTTTGTCAGAGTGGGTCCTGATCGGTTTCTCTGGTACCACCGGTGACTTGTTTCGAATTAGGGTTCCTAAGAGTTCTTCGTCGACTCCTCCTGCGCAACTCTGGAACAACATTCTGACGACATCGACTAACACGAAAGAGAGAGAAGCAAATGGAGAAGGTTTTGGAACAACAACACAGGAAAAGGAAGAAGAGAGAGTTAGGGTTTTATCGATTAACTCAAAAAATGGAGAAGAGAAGGGAAAATCAGGGGAAATGAATACTGTCGATCGTGATTCTCACCAGCGGAAGAGGTATAAACACTATAAGGTTCAAGGAGCTTCTGATACTGGTGGACACTTGCCAAGCCTCTACTCTGTTCTTCCAGACTGTTTAGCTCCTGTTAAAAGGACCTATATTAACAATGTTCAAGTACAGATGAACATATCGATAATGGAGAACTTGGGCAAAATGAACCGGTGCGTGAACATGATAGCACATTTGTTCCATGCTAAAATTGGAGAAGATGGAAATGTTGTTGGAGTAAGAACTGTTGGCTTATCAGAAGTTATGATGTTGGCAGGACTTGCATTCGAGAAGTGGCAGAACAAGCATAAGGCAAAGAGACTTGAGGCATCAAACCTATCTTTGGTGCTACATCTTGGATTGAGGAAACCATGCCTTGATTTTGATGAGCTTGGTAGACCCATGTGGGTTCCACTTGTGGTTTTGTTGTAA 1557 0.4451 MKSVELKDRDISDNVPRSFRLGRCMPGYEHPHKSFRTRNTTMASTQNPFTVFLMLSVFCLSLISTVKSDSFSFNLPSFEPGVRSVLVGDDAKTVDGVLQLTNKDTSGNPTQESVGLAAYFGPLHLSDAKTGRLADFDTEFSFVVNTHRASLHGDGFTFFLASVDFDFPDNSTGGFLGLFNSETAFNTSLNQVVAVEFDSFANEWDPNFPQSDSPHIGIDINSIRSVATAPWPLDIQQGSIGKARISYQSSAKILSVSVAYSDSSVSPNTVVLSYPINLGTVLSEWVLIGFSGTTGDLFRIRVPKSSSSTPPAQLWNNILTTSTNTKEREANGEGFGTTTQEKEEERVRVLSINSKNGEEKGKSGEMNTVDRDSHQRKRYKHYKVQGASDTGGHLPSLYSVLPDCLAPVKRTYINNVQVQMNISIMENLGKMNRCVNMIAHLFHAKIGEDGNVVGVRTVGLSEVMMLAGLAFEKWQNKHKAKRLEASNLSLVLHLGLRKPCLDFDELGRPMWVPLVVLL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01268 518 Gene3D - 68 309 - -
Vian10g01268 518 ProSitePatterns Legume lectins beta-chain signature. 193 199 IPR019825 -
Vian10g01268 518 PANTHER CONCANAVALIN A-LIKE LECTIN FAMILY PROTEIN 49 305 - -
Vian10g01268 518 Pfam Legume lectin domain 71 298 IPR001220 GO:0030246
Vian10g01268 518 CDD lectin_legume_LecRK_Arcelin_ConA 71 298 IPR001220 GO:0030246
Vian10g01268 518 ProSitePatterns Legume lectins alpha-chain signature. 282 291 IPR000985 -
Vian10g01268 518 MobiDBLite consensus disorder prediction 326 377 - -
Vian10g01268 518 MobiDBLite consensus disorder prediction 338 375 - -
Vian10g01268 518 SUPERFAMILY Concanavalin A-like lectins/glucanases 70 298 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01268 Vian-Chr10 21247348 21256473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01268 42 295 Receptor kinase-like Gene Family AT5G10530 36.576 2.90e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01268 - - gmx:100804280 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01268 10 21247348 21256473 Vian1g02106 1 25615412 25617451 PCT
Vian1g02105 1 25600039 25600833 Vian10g01268 10 21247348 21256473 PCT