Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01253 ATGGCATTAACGCGTAGTAACGCGAAAGAGTTTGTGAGCGATGGCGACGGATCTCCTAGGGCAATTCTGGAAACCCCTGTTTCGGAAACAGAGTCCGAGACAGATTCGTCGATTGATAGCGGAAAAGAGGGTTACATGATGCCATGGAAGTCTATGGTTGACGTTTTCAAGTTCAAGTCTGTGCGAAAATTAACTTCCATTCCTTTGCTTTCGGTGAGCCATGATATCACTCGGAAGGGTTTGACCAAAAAACTGGCTCGTATTCGAAGTGCGGAAGACGGTATCGATATTGGAGATATTCCCGCGAAACCCTCTTGGAGAAACTTTGATTATGAAGAGTTAGCAGCTGCTACTAAAAACTTCAGTGCTGAGAACTTGGTTGGAAAAGGTGGTCATGCTGAAGTGTACAAAGGGTGTTTACCTGATGGTCAAGTTATAGCTGTAAAGAGGCTAATGAAGAATGAAAAGGACGCTGCAGATAGAGCTGGAGATTTTTTGACAGAGCTTGGGATTATTGCACACATAAACCACACAAATGCAACACACCTTGTTGGGTTTGGAGTTGATGGCGGCCTCTTCTTTGTCCTGCAATTAGCTGCGCATGGAAGTCTCAGTTCTCTGCTTTTTGGTTCTGAAGGCATGGACTGGGAAAAACGATTCAAGGTAGCTGTTGGAGTGGCTGATGGATTGCATTATCTCCATAAAGAGTGTCCAAGGCGAATCATTCATAGGGATATCAAGGCCTCCAACATCCTACTAAACGAAAATTACGAAGCTGAGATTTCAGATTTTGGACTGGCAAAGTGGCTTCCAAACAAGTGGGCCAACCATGTTGTCTACCCAATAGAAGGCACATTTGGGTATTTGGCTCCGGAGTATTTTATGCATGGAATTGTGGATGAGAGAACTGATGTATTTGCATTTGGAGTTTTGCTGTTGGAGCTCATAACTGGCCGTCGTGCAGTTGATTCAGATAGTAGGCAAAGTCTTGTCAGTTGGGCGAAGCCACTGTTAGACACAAACAATGTAAAGGAAATAGCTGACCCCAGATTAGGAGAGGCGTATGACCGTACAGAAATGATACGTGTGATGGTGACAGCTTCCATGTGTGTCCACCATGCATCCTCCAAGCGTCCATTCATGAACAAGGTTGTGCAGCTGCTAAAGGGTGAAGAGACAATTATAGACATAAAGCAGAATTCAATTGAACCAAAATCTCAATTGTTAGAGGCATGTGACCTAGAAGATTATACTTGCTCAAGTTACCTGAAGGACATGAGTAGGCACATGCAACTGATCATGGAGTGA 1308 0.4419 MALTRSNAKEFVSDGDGSPRAILETPVSETESETDSSIDSGKEGYMMPWKSMVDVFKFKSVRKLTSIPLLSVSHDITRKGLTKKLARIRSAEDGIDIGDIPAKPSWRNFDYEELAAATKNFSAENLVGKGGHAEVYKGCLPDGQVIAVKRLMKNEKDAADRAGDFLTELGIIAHINHTNATHLVGFGVDGGLFFVLQLAAHGSLSSLLFGSEGMDWEKRFKVAVGVADGLHYLHKECPRRIIHRDIKASNILLNENYEAEISDFGLAKWLPNKWANHVVYPIEGTFGYLAPEYFMHGIVDERTDVFAFGVLLLELITGRRAVDSDSRQSLVSWAKPLLDTNNVKEIADPRLGEAYDRTEMIRVMVTASMCVHHASSKRPFMNKVVQLLKGEETIIDIKQNSIEPKSQLLEACDLEDYTCSSYLKDMSRHMQLIME 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01253 435 Gene3D Phosphorylase Kinase; domain 1 99 196 - -
Vian10g01253 435 SUPERFAMILY Protein kinase-like (PK-like) 105 391 IPR011009 -
Vian10g01253 435 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 96 198 - -
Vian10g01253 435 SMART serkin_6 121 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01253 435 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 200 402 - -
Vian10g01253 435 Pfam Protein kinase domain 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01253 435 ProSiteProfiles Protein kinase domain profile. 121 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01253 435 MobiDBLite consensus disorder prediction 1 42 - -
Vian10g01253 435 PANTHER OS08G0249100 PROTEIN 28 412 IPR046958 -
Vian10g01253 435 ProSitePatterns Protein kinases ATP-binding region signature. 127 149 IPR017441 GO:0005524
Vian10g01253 435 Gene3D Transferase(Phosphotransferase) domain 1 200 407 - -
Vian10g01253 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01253 Vian-Chr10 20919318 20923104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01253 109 384 Trihelix Transcription Factor Family AT1G68690 45.614 5.49e-72 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vian10g01253 Pkinase 3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01253 - - gmx:100818314 676.011