Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01252 ATGGCACGTGCCACTAACTGGCTATCGTTCTCCCTCTCCCCCATGGAAATGCTCCGAACCTCGGAACCTCAGTTCGTGCAATACGACGCCGCTTCTGCAACTAACTCGAATCACTACTTTCTCGATAACTTGTACACCAACGGGTGGGGAAACGGGAACCTCAAACCTCAGGTGCTGATGGACCAGAATCTGAACCAGAGCGACGTCAGTTTTGTCGAATCCTCCCAGTCCCAGTCCCAAAGCGTCAGCCATGCGCCACCGCCCAAGCTTGAGGACTTTCTCGGTGACTCCTCTGCGGTGATGCGCTATTCCGACAGCCAGACGGAGACTCAGGACTCTTCGCTGACTCACATGTATGACCACCATGGCTCTGCATACTTTGGTGACCAGCAGGATCTCAAGGCCATTGCTGGATTTCAAGCTTTTTCTACCAACTCTGGCTCCGAGGTTGATGATTCCGCGTCCATTGGAAAAGCACAACCCAGCGAGTTCGGGACTCACTCTATTGAGTCCTCTGGGAACGAGTTCACCGCGTTTTCCGGTGGTCCCACCGGCACTCTCTCTCTGGCTGTAGCACAGAGCTCCGAGAAGAAGGTGGTGGCAGCAGATTCCAGTAGCTCAAAGAAGATCGTGGATACCTTCGGCCAGCGGACTTCTATTTACAGAGGTGTCACCAGACACCGATGGACAGGTAGATATGAAGCGCATCTATGGGACAACAGTTGCAGGAGGGAGGGTCAAGCCAGGAAAGGGCGTCAAGGTGGATACGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTGTGTCCAATTATTCAAAGGAATTGGAGGAGATGAAGCATGTAACGAAGCAAGAATTCATTGCATCACTGAGGAGGAAAAGTAGTGGGTTCTCTAGGGGAGCTTCCATATACAGAGGTGTCACAAGGCATCATCAACAGGGAAGGTGGCAAGCAAGAATTGGCCGCGTAGCTGGAAACAAAGATCTGTACCTGGGAACATTCGCAACGGAAGAGGAGGCAGCGGAGGCATATGACATTGCAGCAATAAAGTTCAGAGGTGCAAACGCAGTAACAAATTTTGAGATGAATAGATACGATGTGGAAGCTATAATGAAGAGTGCTCTTCCAGTGGGTGGGGCAGCAAAACGCTTGAAGCTTTCCCTTGAATCGGAGCAGAAAGTTGGTGTGAGCAGCAGTCAGCAGAATCCACCGTGTGGAAACGTCAGTGGAAGCATAAATTTCTCGGCCATTCACCAGCCTGTTGCTTCGATCCCTTGTGGAATTCCCTTTGATTCTTCAACAGCATATTATCACCACAACCTTTTCCAACATTTTCATCCTACCAACGCTGCCACGGCAGTTTCCACCGTCACTTCGGGCAATGTAGCTGGGCTTACCGCACTTCCTCCACCGGCGACAACGGCAGCTGAGTTCTTTATTTGGCCTCACCAGTCTTATTGA 1509 0.5109 MARATNWLSFSLSPMEMLRTSEPQFVQYDAASATNSNHYFLDNLYTNGWGNGNLKPQVLMDQNLNQSDVSFVESSQSQSQSVSHAPPPKLEDFLGDSSAVMRYSDSQTETQDSSLTHMYDHHGSAYFGDQQDLKAIAGFQAFSTNSGSEVDDSASIGKAQPSEFGTHSIESSGNEFTAFSGGPTGTLSLAVAQSSEKKVVAADSSSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYSKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSALPVGGAAKRLKLSLESEQKVGVSSSQQNPPCGNVSGSINFSAIHQPVASIPCGIPFDSSTAYYHHNLFQHFHPTNAATAVSTVTSGNVAGLTALPPPATTAAEFFIWPHQSY 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01252 502 ProSiteProfiles AP2/ERF domain profile. 319 377 IPR001471 GO:0003700|GO:0006355
Vian10g01252 502 MobiDBLite consensus disorder prediction 71 91 - -
Vian10g01252 502 Pfam AP2 domain 319 369 IPR001471 GO:0003700|GO:0006355
Vian10g01252 502 Pfam AP2 domain 220 275 IPR001471 GO:0003700|GO:0006355
Vian10g01252 502 SUPERFAMILY DNA-binding domain 219 285 IPR016177 GO:0003677
Vian10g01252 502 CDD AP2 318 377 IPR001471 GO:0003700|GO:0006355
Vian10g01252 502 FunFam AP2-like ethylene-responsive transcription factor 318 379 - -
Vian10g01252 502 FunFam AP2-like ethylene-responsive transcription factor ANT 219 285 - -
Vian10g01252 502 PRINTS Ethylene responsive element binding protein signature 359 379 IPR001471 GO:0003700|GO:0006355
Vian10g01252 502 PRINTS Ethylene responsive element binding protein signature 221 232 IPR001471 GO:0003700|GO:0006355
Vian10g01252 502 SUPERFAMILY DNA-binding domain 318 378 IPR016177 GO:0003677
Vian10g01252 502 SMART rav1_2 220 289 IPR001471 GO:0003700|GO:0006355
Vian10g01252 502 SMART rav1_2 319 383 IPR001471 GO:0003700|GO:0006355
Vian10g01252 502 MobiDBLite consensus disorder prediction 71 85 - -
Vian10g01252 502 CDD AP2 219 285 IPR001471 GO:0003700|GO:0006355
Vian10g01252 502 Gene3D AP2/ERF domain 319 379 IPR036955 GO:0003700|GO:0006355
Vian10g01252 502 Gene3D AP2/ERF domain 220 285 IPR036955 GO:0003700|GO:0006355
Vian10g01252 502 ProSiteProfiles AP2/ERF domain profile. 220 283 IPR001471 GO:0003700|GO:0006355
Vian10g01252 502 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 80 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01252 Vian-Chr10 20911409 20915453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01252 88 502 AP2-EREBP Transcription Factor Family AT5G10510 59.960 4.26e-174 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vian10g01252 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01252 K09285 - gmx:100777168 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01252 10 20911409 20915453 Vian1g02126 1 25932160 25936583 PCT