Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01249 ATGACAAATTTCAACATTGGAGACAACAACTTCCACGGAGATATCCCCCAAGAATTAGGTCAGTTGTCAAAACTGGAGTACCTTTCTGTTGGAAATAACTCATTGTTGGTAGGAAAATTTCCTTCAAACTTGACTGCTTGTACTCACCTCAAAATCTTGTTCCTAAATGGCAACAATCTGACTGGTGAAATACCAGTGGAAATTGTCTCACTTCAAAAGCTTCAAAAACTGTTCCTTTTCAAGAACAATTTATCCGGAAGAATCCCATCCTTCATGGGGAATATTTCATCCTTAATCCATCTCTCCATAGGTTCTAACAACTTTAAGGGAGATATTCCACAAGAAATTTGTCGTCTCAAAAGTTTGACGTTTCTATCATTAAAATCGAACAAATTGACCGGACCACTTCCTTCTTGTCTTTATAATATGTCATCTCTTACTCGAATCTCAGTGGCCATAAATCAACTTAACGGCTCTTTGCCATCCAACATGTTCCACTCCCTCTCCAATCTCCAAGCACTTCATATTCATATCAATCAATTCTCAGGATCAATCCCATCTTCCATAACCAATGCATCCATCCTTTCAACAATTGATATGGCTCATAACAATCTTTTCGGGCAAGTTCCAAGTTTGGGGAAGCAGATACATCTTCAATATCTAGGTTTAAATACAAACAATCTAGGTGACAATTCACCAAATGATCTGGAGTTTTTAAAATCATTGACAAACTGTAGCGAGTTGCAAATGTTGTCTTTGTCTTACAATAATTTTGGAGGTCGTTTGCCAAATTCTTTGGGCAATTTATCCACCCAACTTAGTAGATTGTATCTCGGGGGAAACCATATATCAGGAGATATTCCAGCCACATGCGGAAATCTAATTGACTTAATTCTTTTTACAATGGAACAAAACCTCCTTGATGGAGTTATTCCGACAACTTTTGAGAAGCTACAGAAGTTGCAAGTGTTGGACTTAAGAGGAAACAAATTGTCAAGCTTAGGAACCTTCATAGGCAATCTCACTCAACTGTTTTATTTGGACGTGGCAGAAAACATGTTAGAAGGAAGTATTCCTCCAAGTCTAGGAAATTGCCAAGATTTGCAACATTTAGACCTTTCCCAGAACAACCTCACGGGAACCATACCATTGGAGGTTTTTAATCTTTCATATCTAGCTGATGCTTTTTCATTGTCACAAAACTTGTTGAGTGGTAATATACCAGAAGAAGTGGGCAACCTGAAAAATCTCAACTCGTTATATTTGTTTGAGAATCGTCTGTCTGGTCACATTCCAGAAACTATTGGAGAATGCATAATGTTGGAGCAACTCTATTTGCATGGGAATTCCTTACAAGGAAGCATCCCTTCTTCTTTGGCATCACTCAGAGGTCTTCAAAGTTTAGACCTCTCGCGGAACCTCTTGTCTGGACCAATTCCTAGAGTTCTGCAGAACATTTCTTCGTTGCAATATTTCAATGTATCATTTAACATGTTGGATGGTGAGGTACCAATTAAAGGCATATTTAGTAATGCAAGTGGGATAATTGTGACTGGGAATAGTAAGCTTTGTGGGGGTATTTCAAAGCTGCATCTACCATTATGTCCTGTCAAAGCCACGAAACAAGCAAAGCATCACTCACTCAGATTGATAGCAATTATAGTAAGTGTGGTTGCTTCTCTTCTCATATTGTTGGTTATTGTAACAATCTACTGGATGAGGAAAAGGAGTAATAAACCATCTTTGGATTCACCAACAACTGACCAACTGACTAAAGTTTCATACCAAAGCCTATACAATGGAACAAATGGGTTCTCAACTTCAAACTTGATCGGATCTGGAAGTTTTAGCTCTGTATATAAAGGAACTCTCGAGCAAGAAGACAAGATCGTTGCCATAAAGGTCCTAAACCTTCAAAAGAAAGGAGCTGACAAAAGTTTCATTGTTGAATGCAATGCGCTTAAAAATATTAGACATCGAAATCTGGTTCCGACTTTGACTTGTTGCTCTAGCATAGATTACAAAGGTGGATAA 2034 0.381 MTNFNIGDNNFHGDIPQELGQLSKLEYLSVGNNSLLVGKFPSNLTACTHLKILFLNGNNLTGEIPVEIVSLQKLQKLFLFKNNLSGRIPSFMGNISSLIHLSIGSNNFKGDIPQEICRLKSLTFLSLKSNKLTGPLPSCLYNMSSLTRISVAINQLNGSLPSNMFHSLSNLQALHIHINQFSGSIPSSITNASILSTIDMAHNNLFGQVPSLGKQIHLQYLGLNTNNLGDNSPNDLEFLKSLTNCSELQMLSLSYNNFGGRLPNSLGNLSTQLSRLYLGGNHISGDIPATCGNLIDLILFTMEQNLLDGVIPTTFEKLQKLQVLDLRGNKLSSLGTFIGNLTQLFYLDVAENMLEGSIPPSLGNCQDLQHLDLSQNNLTGTIPLEVFNLSYLADAFSLSQNLLSGNIPEEVGNLKNLNSLYLFENRLSGHIPETIGECIMLEQLYLHGNSLQGSIPSSLASLRGLQSLDLSRNLLSGPIPRVLQNISSLQYFNVSFNMLDGEVPIKGIFSNASGIIVTGNSKLCGGISKLHLPLCPVKATKQAKHHSLRLIAIIVSVVASLLILLVIVTIYWMRKRSNKPSLDSPTTDQLTKVSYQSLYNGTNGFSTSNLIGSGSFSSVYKGTLEQEDKIVAIKVLNLQKKGADKSFIVECNALKNIRHRNLVPTLTCCSSIDYKGG 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01249 677 SUPERFAMILY L domain-like 271 525 - -
Vian10g01249 677 ProSiteProfiles Leucine-rich repeat profile. 320 341 IPR001611 GO:0005515
Vian10g01249 677 Pfam Leucine Rich Repeat 368 383 IPR001611 GO:0005515
Vian10g01249 677 Gene3D Ribonuclease Inhibitor 1 244 IPR032675 -
Vian10g01249 677 Gene3D Ribonuclease Inhibitor 245 535 IPR032675 -
Vian10g01249 677 SMART LRR_sd22_2 365 386 - -
Vian10g01249 677 SMART LRR_sd22_2 462 488 - -
Vian10g01249 677 SMART LRR_sd22_2 22 46 - -
Vian10g01249 677 SMART LRR_sd22_2 119 145 - -
Vian10g01249 677 SMART LRR_sd22_2 318 343 - -
Vian10g01249 677 Gene3D Phosphorylase Kinase; domain 1 567 675 - -
Vian10g01249 677 SMART LRR_typ_2 168 192 IPR003591 -
Vian10g01249 677 SMART LRR_typ_2 462 485 IPR003591 -
Vian10g01249 677 SMART LRR_typ_2 22 47 IPR003591 -
Vian10g01249 677 SMART LRR_typ_2 414 438 IPR003591 -
Vian10g01249 677 SMART LRR_typ_2 119 142 IPR003591 -
Vian10g01249 677 SMART LRR_typ_2 366 389 IPR003591 -
Vian10g01249 677 SMART LRR_typ_2 318 339 IPR003591 -
Vian10g01249 677 SMART LRR_typ_2 143 167 IPR003591 -
Vian10g01249 677 SMART LRR_typ_2 341 365 IPR003591 -
Vian10g01249 677 PRINTS Leucine-rich repeat signature 368 381 - -
Vian10g01249 677 PRINTS Leucine-rich repeat signature 462 475 - -
Vian10g01249 677 Pfam Leucine rich repeat 441 499 IPR001611 GO:0005515
Vian10g01249 677 Pfam Leucine rich repeat 73 132 IPR001611 GO:0005515
Vian10g01249 677 Pfam Leucine rich repeat 272 331 IPR001611 GO:0005515
Vian10g01249 677 PANTHER OS04G0122200 PROTEIN 118 673 - -
Vian10g01249 677 ProSiteProfiles Protein kinase domain profile. 605 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01249 677 FunFam LRR receptor-like serine/threonine-protein kinase EFR 239 541 - -
Vian10g01249 677 FunFam LRR receptor-like serine/threonine-protein kinase EFR 576 677 - -
Vian10g01249 677 SUPERFAMILY Protein kinase-like (PK-like) 578 673 IPR011009 -
Vian10g01249 677 SUPERFAMILY L domain-like 4 228 - -
Vian10g01249 677 ProSitePatterns Protein kinases ATP-binding region signature. 611 634 IPR017441 GO:0005524
Vian10g01249 677 Pfam Protein kinase domain 606 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01249 677 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01249 Vian-Chr10 20871474 20873507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01249 1 676 Receptor kinase-like Gene Family AT3G47570 45.255 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vian10g01249 Pkinase 2.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01249 - - gmx:100801459 887.1