Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01242 ATGGCTCTTCCTGGTTCCCTGCAGTTGTCCCATGGATTGGGACTTTGCAGGAACTTGGGCTGCAATAAACATTCGAGGGCAACGGGACATGGCAAGTTACATTTATTTAGGGCAGGTCTTTCATATTCTATTTCGTTCATGAGACAGGAATGTGGGGGTTTTCAATACCTTCGTTATATAAACAAGCCAACACATACATTATCATGCAAGGGCCGATCTTTTAAGTGTCATTGTCTTTTAGTGCCAGGTCAACCAAATGATCTTCCTGCTGTTAAGGCAGCTGCTACCGTGTTGGCTAGGTCTAGTAATTTGTTACAAAATAATCCTATCATAGTGAAGTTGATTCCTGCAATTGGCGTTATCATTTTTGCAATATGGGGTGTTGGTCCATTATTGTTCCAGACAAGGAAAATACTCTTCCAGAGGAGTGATAATAGTTGGAAGAAAAGTACCACTCACTATATAGTAACTTCTTACCTTCGGCCATTACTGTTATGGACTGGAGCAATACTTATTTGCAGAGCATTGGAGCCATTAATTCTACCTTCAGAACCTGGTCAGGTTGTTAAGGACCGGCTTCTGAATTTTGTGAGATCATTGTCAACGGTTCTGGCCTTTGCCTATTGTTTGTCAAGTGTAATTCAACAATCACAGAAATTCTTTGCGGAGGCTACTGATGCAAGTGAGACGAGAAATATGGGATTCCAATTTGCTGGCAAAGCTGTTTATTCTGCAGTATGGATAGCAGCCTTTTCATTGTTCATGGAATTATTAGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTCTTGGGACAGTTTTGCTGACCCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGGCCTTTTGTGGTTAATGAATGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACTGTCGAGCATGTTGGCTGGTGGTCACCAACAATTATTAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAAAAAACACATTGGCGAATCAAAACTCATCTAGCCATTAGTCATTTGGATGTAAACAAGATTAATAACATTGTTGCTGACATGCGGAAGGTATTGGCCAAAAATCCTCAAGTTGAGCAGCAGAGACTGCACAGGAGAGTGTTTTTGGACAACATAAATCCTGAAAATCAGGCTCTTTTGATTCTGATATCTTGTTTTGTTAAGACCTCACATTTTGAAGAATATCTTTGTGTTAAGGAAGCAATACTGCTGGATCTTCTTAGAGTTATAGGCCATCACCGAGCCAGACTTGCGACACCGGTTCGTACCCTGCAGAAAGTATACAGTGATGCTGACTTGGATAATATACCGTTTGCAGATTCCACATTTGGTGGAGGTCCGGTCACAGTACCTAACCGCCCATTATTAGTGATTGAACCATCTTACAAAATCAATGGAGACGATAAGATGAAAAGTCGATCTGCACGACCAGTTGTTGATCAAGATAATAAGACATCGAACTCTGATGCAAATGGAAACTCCAAGACACCTGTGACATCTAATTCTGACACAAATGGGAAAACAGTTGTGACACCCAAACCCGACCCAGAAGTGGGTGAGAACAAGCCACTGAAATTAGATTCAAACAAGGAAAACGTGGAGGTTCCAGAATCTTCTTCTAAATCTAAAGTATCTGGTTCGGTAGTAGAAAATTCAGCCCAGAAGGACATAGATTCCAAGCAATCCAAGGGTCAGACCACTAAAAACATAAAGCCAAATATTGAGTCTGAGAATGTAGTGCCCTCCTCATCTAACAGTGCTGACAAAACTGGTGGACTTAATGTTAATATAGCATCAAAACCGCAAGGGGAAAAGAAACCTGCTGCACAGCCTCAAGCATCCAGGACTGTTCTTGAAGAAAATATAGTACTAGGTGTTGCGTTGGAAGGATCAAAGAGGACCCTTCCCATTGATGAGGAGATTGACAATATTGACAATGTAACATCTCGAGAGGCAAAGGAAATGGCTGCATTGCAGGGTGGAAATGGACCTCCAAAGGCTCTAGATGGAAATGACTAG 2118 0.416 MALPGSLQLSHGLGLCRNLGCNKHSRATGHGKLHLFRAGLSYSISFMRQECGGFQYLRYINKPTHTLSCKGRSFKCHCLLVPGQPNDLPAVKAAATVLARSSNLLQNNPIIVKLIPAIGVIIFAIWGVGPLLFQTRKILFQRSDNSWKKSTTHYIVTSYLRPLLLWTGAILICRALEPLILPSEPGQVVKDRLLNFVRSLSTVLAFAYCLSSVIQQSQKFFAEATDASETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILISCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKVYSDADLDNIPFADSTFGGGPVTVPNRPLLVIEPSYKINGDDKMKSRSARPVVDQDNKTSNSDANGNSKTPVTSNSDTNGKTVVTPKPDPEVGENKPLKLDSNKENVEVPESSSKSKVSGSVVENSAQKDIDSKQSKGQTTKNIKPNIESENVVPSSSNSADKTGGLNVNIASKPQGEKKPAAQPQASRTVLEENIVLGVALEGSKRTLPIDEEIDNIDNVTSREAKEMAALQGGNGPPKALDGND 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01242 705 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 688 IPR045042 -
Vian10g01242 705 MobiDBLite consensus disorder prediction 512 542 - -
Vian10g01242 705 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Vian10g01242 705 Gene3D - 195 297 - -
Vian10g01242 705 MobiDBLite consensus disorder prediction 685 705 - -
Vian10g01242 705 Pfam Mechanosensitive ion channel 240 446 IPR006685 GO:0016020|GO:0055085
Vian10g01242 705 MobiDBLite consensus disorder prediction 571 630 - -
Vian10g01242 705 MobiDBLite consensus disorder prediction 499 650 - -
Vian10g01242 705 Gene3D - 299 354 IPR023408 -
Vian10g01242 705 MobiDBLite consensus disorder prediction 551 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01242 Vian-Chr10 20757994 20766826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01242 9 697 Mechanosensitive Ion Channel Family AT5G10490 58.790 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01242 K22047 - gmx:100796304 1187.94