Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01234 ATGCAACATCTTCGAAGTTACTATAACTCAGAAGCTCAAATGATAAGAGGTGGGTTTCCTCAGCCATTCATCTCTAGGACATACCAAACCAGTTTCTTGAAGCAAAGATCAAAGACAGAGATAAAAGTTGTAGCCGCAAAGAAACACAGTGAAGCTGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAACTATCCTTCCCAACTTGATCAAACATGGTGAATTAGATTTTGTTATGAACCATCAGAAGGACAAGGCATCGGTGTTGGCAGAGACTATCAAGCAAGTGAAGGAGCTGAAGAAAAAAGTATCAAAAGTGGAACAAGAGAGTTGTGGTAGCTCATCAAAGGATGTTGTTAAGTTTCCTAGTGGGGCAGACAGGTTGAGGTTGGAAAAATGTAATAATGAGGAGGACCTAGTGAAGGCCACATTGAGTTGCGAGGATAGTATGGGATTGATGTCTGCAATATCAAGGGCAATGGGATCAGTGAAAACCAAAGTGGTGAAGGCTGAGATAGTGAGTGTGGGAGGGAGAAACAGAAGTGTGTTGTGGGTGCAAGGTCTTGGGAATGATCATATGGGGATGCTCAAGAGCTCTTTGAAGATTGCCATGCACAAGCCAGCCTTTAAGATGCGCCGTTCTACTCACTAA 666 0.4279 MQHLRSYYNSEAQMIRGGFPQPFISRTYQTSFLKQRSKTEIKVVAAKKHSEAEKRRRMRINGQYETLRTILPNLIKHGELDFVMNHQKDKASVLAETIKQVKELKKKVSKVEQESCGSSSKDVVKFPSGADRLRLEKCNNEEDLVKATLSCEDSMGLMSAISRAMGSVKTKVVKAEIVSVGGRNRSVLWVQGLGNDHMGMLKSSLKIAMHKPAFKMRRSTH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01234 221 PANTHER TRANSCRIPTION FACTOR BHLH30 28 213 IPR045847 GO:0003700|GO:0006355
Vian10g01234 221 Pfam Helix-loop-helix DNA-binding domain 48 104 IPR011598 GO:0046983
Vian10g01234 221 SMART finulus 50 110 IPR011598 GO:0046983
Vian10g01234 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 113 IPR036638 GO:0046983
Vian10g01234 221 Coils Coil 94 114 - -
Vian10g01234 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 104 IPR011598 GO:0046983
Vian10g01234 221 Gene3D - 44 115 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01234 Vian-Chr10 20577272 20578180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01234 43 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 36.424 1.71e-21 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g01234 HLH 5.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01234 - - gmx:102667782 294.278