Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01229 ATGGCTCATAACTCACAGAACAGTAGCACCTGCTTTGATGATGATTTCGAATGTGATGGAGCGGATGATTCTAGAATCTTGCATTGCTGGAACCACCGGAACCTTCACTCTGAATATGAAGATGGTGGTGGATCGGAGGAATTAGCATGTGCTGTGCCCCAGAGTGAGGAAACTGTGAGGGCTATGGTGGCGAGAGAGAGGGAGCATTTCCCGAGGGTTGATTACTTGCAGAGACTAAGGAGCGGGAAGTTGGCTTTGGGTGTTAGGAGGGATGCACTTGATTGGATTTGGAAGGCTCATGCTTATTTTGGCCTTGGACCCTTGAGTTTTTGTTTGGCTGCGAACTACTTGGATCGCTTCCTATCGGTTTTTGACTTACCGAAAGGTGTAAGTTGGACTGTGCAATTGTTAGCTGTAGCGTGCTTGTCAATTGCAGCTAAAATGGACGAGATTAGAGTGCCTCAATCTGTAGATTTACAGGTTGGGGAACCAAAGTTTGTGTTTGAAGCTAAAACCATTAAAAAAATGGAACTACTGGTCTTAAGCAAGTTGAGATGGAAAATGTATGCATTAACTCCTTATTCCTTCATAGAATACTTCCTTAGCAAGATCACTTGTGAGAAACACCCAACAAAATCATCCATTGCAATATCAGTGCAGCTCATCCTCCGTATAATCAGTGGTATCGACTTCTTGGAATTCCGGCCTTCTGAAATTGCTGCTGCGGTGGCAGTTTCTGTTTTAGGAGAATCACAAGCGAAAGATATGGATAAGTCCATTGCTGATCTCTTTATAGTAGAGAAGGGTAGAGTTCTAAAGTGTGCTGAATTGATAAGAGATTTGTCCTTGAACAATGTTGCTGCTAGTGTAGGAAGCAAGGTGCCACATGTGCCTCAAAGTCCTATGGGGGTGATGGATGCTGCTGGGTGCTTAAGTTATAAGAGTGATGAATTAACAGTTGGATCATGTTTAAATTCTTCACATGATAGTCCAAACACTAAGAGTAGTAAAGCAGAAGGACCTTCTAATGAACCTCCAAGTGATGAAATGTGA 1053 0.4302 MAHNSQNSSTCFDDDFECDGADDSRILHCWNHRNLHSEYEDGGGSEELACAVPQSEETVRAMVAREREHFPRVDYLQRLRSGKLALGVRRDALDWIWKAHAYFGLGPLSFCLAANYLDRFLSVFDLPKGVSWTVQLLAVACLSIAAKMDEIRVPQSVDLQVGEPKFVFEAKTIKKMELLVLSKLRWKMYALTPYSFIEYFLSKITCEKHPTKSSIAISVQLILRIISGIDFLEFRPSEIAAAVAVSVLGESQAKDMDKSIADLFIVEKGRVLKCAELIRDLSLNNVAASVGSKVPHVPQSPMGVMDAAGCLSYKSDELTVGSCLNSSHDSPNTKSSKAEGPSNEPPSDEM 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01229 350 MobiDBLite consensus disorder prediction 322 350 - -
Vian10g01229 350 PANTHER CYCLINS 38 279 IPR039361 -
Vian10g01229 350 MobiDBLite consensus disorder prediction 322 342 - -
Vian10g01229 350 FunFam D2/4-type cyclin 72 184 - -
Vian10g01229 350 FunFam D6-type cyclin 185 276 - -
Vian10g01229 350 Pfam Cyclin, N-terminal domain 60 189 IPR006671 -
Vian10g01229 350 Pfam Cyclin, C-terminal domain 192 288 IPR004367 -
Vian10g01229 350 SMART Cyclin_C_2 191 313 IPR004367 -
Vian10g01229 350 SUPERFAMILY Cyclin-like 50 188 IPR036915 -
Vian10g01229 350 SMART cyclin_7 94 182 IPR013763 -
Vian10g01229 350 CDD CYCLIN_AtCycD-like_rpt2 192 278 - -
Vian10g01229 350 Gene3D - 61 276 - -
Vian10g01229 350 Gene3D - 72 189 - -
Vian10g01229 350 CDD CYCLIN_AtCycD-like_rpt1 88 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01229 Vian-Chr10 20489204 20491115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01229 54 259 Core Cell Cycle Gene Families AT5G65420 59.135 2.33e-84 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01229 K18810 - gmx:100794010 488.804