Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01220 ATGGAAGAAGCAATGAGGCGTCTCAACGGTGTGGCTCCGATTCTCGGACCCGACCCGAAAGAGTCATCAGTCGTTGAAAACCCTAAACGCTCCACCGCCGTCAACAAGCGGACTTTAAGAGAAGACGGCGGCGGCGGAGCCATGAGGTATCGTGGTGTGAGGCGCAGGCCGTGGGGACGTTATGCCGCCGAGATTAGGGACCCTCAGTCAAAGGAGCGACGGTGGCTGGGAACCTTCGACACCGCGGAGGAAGCTGCCTGTGCCTACGACTGCGCTGCCCGAGCCATGCGCGGTCTCAAGGCTCGCACCAACTTCGTGTACCCCACTTCTCCGCAAGCTTCTTCCGCCACAGCCGACCACTTCTTTCATTCTTTTAGTAATAACAACTTCACCAAACACTCTCCGTCACTACCCTTTACCAGCCACCTTAGCCGCCACTCAACTGGTTCCGCCAGCTGCTTTGACTACCCTAGCGCCGTTGACTTTTCCTTTTCCAACCCGCGAAACCCTTCTTCCTCACTCAACATGCTTCTCCTTCGCGACCTCATTAACACTTCCTCAAATAACCCTTCCTTGCTTTCTTCTTCCACCCACAACTTCCACGACCAGTTCTACAACAAGGGTTCTTCTACTTTTCCATCGTTACCAACTGTTTCTTCTTCTTCTTCATCTTCACCTCTTATTCCTAGTTATTCGGTGAGTTACCCTTTGGAAGGCGCTTCGTCTGTTAATGTGAACACGGTCTGTGGAACTAATTTCACTGAAAAAGGTGATGATGACAGTGGGTCTGGATTTTTCTCTCGAGAGTCTTCGGATTCGGGATTGTTGGAAGAGATAGTTAACAAGTTCTTGCCCAAAGCGAAGCCTAATAAATGCGAGAGTTTGCCAAAAATGGAGAGTGTCCGAAACCCTCAGGAGTCCGTTCTTCCTTCTCTTATTTCTGAATCAACACTTGTTTCCACCGCGCAATGCTATGATGACACGAAGAAGGGGTTTCATAAGAATGAGAGTTTCGGCTTTTCTTTCGATCATCAGGGTCTTCCCATGCAGAAATTTGACAACTTTAATGGGTTTCATCACTTGCAGGGTATGGCTATGGGGAATGAACAAACCATGACGAATCATGCAGAGAATTGCATCGTTGAAGATGTTTTTCAGTACCAAGAGCTTCTTAATTCTTTTGCAATCAGGATGCAAAATGCTTAG 1206 0.4884 MEEAMRRLNGVAPILGPDPKESSVVENPKRSTAVNKRTLREDGGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQASSATADHFFHSFSNNNFTKHSPSLPFTSHLSRHSTGSASCFDYPSAVDFSFSNPRNPSSSLNMLLLRDLINTSSNNPSLLSSSTHNFHDQFYNKGSSTFPSLPTVSSSSSSSPLIPSYSVSYPLEGASSVNVNTVCGTNFTEKGDDDSGSGFFSRESSDSGLLEEIVNKFLPKAKPNKCESLPKMESVRNPQESVLPSLISESTLVSTAQCYDDTKKGFHKNESFGFSFDHQGLPMQKFDNFNGFHHLQGMAMGNEQTMTNHAENCIVEDVFQYQELLNSFAIRMQNA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01220 401 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Vian10g01220 401 MobiDBLite consensus disorder prediction 33 49 - -
Vian10g01220 401 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Vian10g01220 401 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Vian10g01220 401 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Vian10g01220 401 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Vian10g01220 401 MobiDBLite consensus disorder prediction 1 50 - -
Vian10g01220 401 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 230 - -
Vian10g01220 401 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Vian10g01220 401 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Vian10g01220 401 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Vian10g01220 401 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01220 Vian-Chr10 20216689 20217894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01220 1 286 AP2-EREBP Transcription Factor Family AT1G24590 36.877 2.01e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian10g01220 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01220 - - vum:124821082 719.924