Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01214 ATGGTCCACAGCAATATACACACTCCTCTCAAGCTCCCACCGTTATCCCAACCCCATCTTCCTCTTCCCACGGGCTTCACCACCATGCCTCTTCTACTCGCTCGCACACCACCATCTTCACTTCCTCCAATCCTTCACCACCACTACAACAGCAACAACCACCACCTTCTAATCGCACCTTCTCAGAAGCGCTTCCCTCTCATTGCAGGGCCAATTCTTCTTCCCCGGCGCATTCTAGCATCATCGCCTCTCAAGTGCGCCTCCATCAACGGAGTCCCCATTCTTAACAATCCAGAAGCTTCCACAGAACAAGTCCACGCCGGCGAGTTACTTCAGAGGATTCGCAAATGGCTCGACTTTTTACCGTTGATACTTCCCGGCGGGCGGTGGTGGGACTTCTCTGACGACGTTGACGTTCAGCTGGTGGCGCAGCCGGTGACCGTGTGGCGCGCGCTAGGCAAAATGTGGGAGCTTGTCGCGCGTGACAGATGGGTGATCATCGCTGCTTTCTCTGCTCTCATTGTTGCTGCTGTTTCGGAGATTTCTATTCCGCATTTCTTGACGGCGTCCATTTTCTCGGCACAGGGTGCGGACCTTGTTGTTTTTCATCGGAATGTACGCTTGTTGGTTCTGTTGTGCGTGACTTCGGGAATATGCAGTGGGATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACGCTATACTCTTCTCTTCTACTGCAGGACATATCGTTTTTTGACAATGAAACGGTAGGTGATTTGACAAGTAGGCTTGGGGCTGATTGTCAACAAGTGTCAAGAGTTATTGGAAATGATCTTAACTTGATATTGCGCAACTTTCTTCAGGGTGGAGGTTCATTAATCTACTTGTTGATTTTATCTTGGCCACTTGGTTTATGTACATTGGTGATTTGCTCCATATTAGCAGCAGTCATGTTACGCTATGGAAGTTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCGGCAAATGATGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTACGAGTTTATGGAACAGAAGAAGAAGAATATGGAAGGTATAATTGGTGGCTAGGGAAATTAGCTGACATCAGCTTGCGACAAAGTGCTGCTTATGGAGTTTGGAATTTTAACTTTAATATCCTTTATCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGAATGTCTATTCTAGGGGGTCATATCACAGCTGAGAAACTTACCAAATACTTGCTTGACACTGGTGGTCGTCATAAGCAATATAGGTATAAAGTTGCAGAGGTATCTGTAGTGCAACATGTTAGCTTTGCTGTCCATCCTGGTGAGGTGGTTGCAATAGTTGGACTTAGTGGTAGTGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACGAATGGTCAGATTTTGGTAGATGACATCCCTATTCAAGACTTGGACATCATGTGGTGGAGAGAGAGAATTGGATTTGTGGGCCAGGAACCCAAACTCTTCCGGATGGATATTAGTTCAAACATTAGATATGGATGTAGAGATGTAAAGCAGGAGGATATTGAATGGGCTGCAAAGCAAGCCTATGCCCATGACTTTATCTCAGCTCTTCCCAATGGTTATGGGACACTTGTTGATGATGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCCTTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACCAGTGCACTTGATGCTGAAAGTGAGCATAATGTCAAGGGTGTTCTTCGGTCTGTGAGAAGTGATTCTGCAACCAGAAGTGTCATAGTCATCGCACACAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCAAATTGTTGAGATTGGAAGTCACAGGGAACTTCTCTTAAGAGATGGTTTATATGCACGGTTAACTAGGAAACAGGCTGATGCCATGGCATGA 2016 0.4578 MVHSNIHTPLKLPPLSQPHLPLPTGFTTMPLLLARTPPSSLPPILHHHYNSNNHHLLIAPSQKRFPLIAGPILLPRRILASSPLKCASINGVPILNNPEASTEQVHAGELLQRIRKWLDFLPLILPGGRWWDFSDDVDVQLVAQPVTVWRALGKMWELVARDRWVIIAAFSALIVAAVSEISIPHFLTASIFSAQGADLVVFHRNVRLLVLLCVTSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNFLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGSYQKKAARLIQEVTASANDVAQETFSLIRTVRVYGTEEEEYGRYNWWLGKLADISLRQSAAYGVWNFNFNILYHSTQVIAVLFGGMSILGGHITAEKLTKYLLDTGGRHKQYRYKVAEVSVVQHVSFAVHPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILVDDIPIQDLDIMWWRERIGFVGQEPKLFRMDISSNIRYGCRDVKQEDIEWAAKQAYAHDFISALPNGYGTLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSATRSVIVIAHRLSTIQAADRIVVMDGGQIVEIGSHRELLLRDGLYARLTRKQADAMA 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01214 671 ProSitePatterns ABC transporters family signature. 565 579 IPR017871 GO:0005524|GO:0016887
Vian10g01214 671 Pfam ABC transporter transmembrane region 167 422 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian10g01214 671 CDD ABC_6TM_TAP 169 427 - -
Vian10g01214 671 Gene3D ABC transporter type 1, transmembrane domain 149 427 IPR036640 GO:0005524|GO:0016020
Vian10g01214 671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 666 IPR027417 -
Vian10g01214 671 Gene3D - 441 667 IPR027417 -
Vian10g01214 671 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 167 427 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian10g01214 671 SMART AAA_5 455 642 IPR003593 GO:0016887
Vian10g01214 671 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 417 665 IPR003439 GO:0005524
Vian10g01214 671 Pfam ABC transporter 447 593 IPR003439 GO:0005524
Vian10g01214 671 SUPERFAMILY ABC transporter transmembrane region 155 425 IPR036640 GO:0005524|GO:0016020
Vian10g01214 671 PANTHER ABC TRANSPORTER B FAMILY 441 663 IPR039421 -
Vian10g01214 671 FunFam Multidrug ABC transporter ATP-binding protein 431 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01214 Vian-Chr10 20120100 20128921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01214 237 669 Calmodulin-binding Proteins AT2G36910 32.258 1.58e-59 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01214 - - gmx:100775951 1001.5