Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01196 ATGAAGAAAGTAGTCTCTCTCATCTCTTTATGCTACCTTGTTGTGATGAAGTTACTACTGCTATCAAAGACTGTTATAGCAGAACCAAGGGCCAAGACGGTCCTAGTAACATGTGGCAATGTACGAGAGCATAATTCTACTATATTTGTTCCCAATTTTGTTGCAACTATGGAGAAGATCAGTGATGAGATGCGGAAAACTGGCTTTGGCACAGCAGTTGTAGGGACAGGACCTGATACTAACTATGGCCTGGCCCAGTGTTATGGGGATCTTTCATTGCTTGACTGTGTATTGTGCTATGCTGAGGCACGTACTGTTCTTCCTCAGTGTTACCCTTATAATTCTGGTCGCATTTTCCTTGATGGGTGCTTCATGAGGGCTGGGAATTATAGTTTCTTTAATGAGTATACAGGACCAGGAGACAAAGCTGTATGTGGGAACACGACCAAGAAGAATTCAAGTTTTCAAGCAGCGGCAAAGCAAGCAGTTTTAAGAGCAGTTCAAGATGCACCCAACAACAAAGGATATGCTAGAGGGAATGTTGCTGTCGCAGGAACAACTAACCAATCTGTTTATGTTCTGGCGGATTGTTGGAGGACTTTGGACCAAAGGTCTTGCAAAGCATGTCTTGAGAATGCATATTTTTCCTTACAGGGATGCTTGCCCTGGTCAGAAGGGCGAGCACTCCACACCGGCTGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAACAGGAAAATGGGAGTTCAAGAGGTAACGTGGTAGTAATAGTGGTTGCAGTAGTTAGTTCGGTGATTGTTTCGGTGGTTGGAGTAGCTATTGGAGTTTATATATGGAAACAAAGATACATTCAGAAGAAACGAAGAGGTTCAAATGATGCAGAAAAGTTAGCAAAATCTCTTCAGAACAAAAGCTTGAACTTCAAGTACTCTACATTGGACAAAGCTACTGAATCTTTTCATGAAAATAACAAGTTAGGGCAAGGAGGATTTGGAACAGTTTATAAAGGAGTTCTAGCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAACAACAGACATAGGGCAGCAGATTTCTACAACGAAGTCAACATAATTAGTAGTGTGGAACACAAGAATCTGGTCAGACTGTTAGGATGCAGTTGTTCAGGACCTGAAAGCCTGCTTGTTTATGAATTCCTGCCCAATAAAAGTCTTGATCGCTTCATTTTTGATAAAAACAAGGGCAAAGAATTAAACTGGGAAAAGAGATTTGAAATTATCATCGGGACAGCCGAAGGATTAGTTTATCTGCACGAGAACTCTAAAACAAAGATAATTCACAGAGATATAAAAGCCAGCAACATCCTATTGGATGCAAAGTTTCGTGCTAAAATTGCAGATTTTGGTCTGGCCAGGTCCTTTCAAGAGGACAAGAGCCACATAAGTACAGCTATTGCAGGAACTTTGGGGTATATGGCTCCTGAGTACCTAGCTCATGGTCAGTTAACAGAAAAGGCAGACGTGTATAGTTTTGGAGTGTTGCTGCTAGAGATGGTCACTGGTAGACAGAACAACAGGAGCATAGTATCGGAGTATTCAGACAGCTTAGTTACAGTGGCATGGAAGCATTTTCAGGCAGGGACTGCTGAACAATTATTTGATCCAAATATAGAGTTACAGGAAGACAACAACAGCGAGGTTAAGGATGAGATTTTAAGAGTGGTTCACATAGGACTTCTATGCACCCAAGAGGTCCCTTCGTTACGACCAATCATGTCAAAGACATTAAAGATGCTAACAAAGAAGGAGGAGAATCTAATTGCTCCTTCTAATCCACCCTTCCTAGATGAGAGTACCATGGAACTTCATGACACAAGTGCGGACCCATTTTATCCTCTTAATGCAGCTGATTCAGTGGCTACCATGTCCCATAGCTCTTTCTATCCCAGGTGA 1947 0.4181 MKKVVSLISLCYLVVMKLLLLSKTVIAEPRAKTVLVTCGNVREHNSTIFVPNFVATMEKISDEMRKTGFGTAVVGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCYPYNSGRIFLDGCFMRAGNYSFFNEYTGPGDKAVCGNTTKKNSSFQAAAKQAVLRAVQDAPNNKGYARGNVAVAGTTNQSVYVLADCWRTLDQRSCKACLENAYFSLQGCLPWSEGRALHTGCFMRYSDTDFLNKEQENGSSRGNVVVIVVAVVSSVIVSVVGVAIGVYIWKQRYIQKKRRGSNDAEKLAKSLQNKSLNFKYSTLDKATESFHENNKLGQGGFGTVYKGVLADGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDKNKGKELNWEKRFEIIIGTAEGLVYLHENSKTKIIHRDIKASNILLDAKFRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEMVTGRQNNRSIVSEYSDSLVTVAWKHFQAGTAEQLFDPNIELQEDNNSEVKDEILRVVHIGLLCTQEVPSLRPIMSKTLKMLTKKEENLIAPSNPPFLDESTMELHDTSADPFYPLNAADSVATMSHSSFYPR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01196 648 SMART serkin_6 322 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01196 648 Gene3D Phosphorylase Kinase; domain 1 282 397 - -
Vian10g01196 648 ProSiteProfiles Protein kinase domain profile. 322 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01196 648 CDD STKc_IRAK 328 599 - -
Vian10g01196 648 FunFam Cysteine-rich receptor-like protein kinase 2 398 605 - -
Vian10g01196 648 FunFam Putative DUF26-domain receptor-like protein kinase family protein 290 397 - -
Vian10g01196 648 FunFam Cysteine-rich receptor-like protein kinase 3 141 242 - -
Vian10g01196 648 Gene3D Transferase(Phosphotransferase) domain 1 398 608 - -
Vian10g01196 648 SUPERFAMILY Protein kinase-like (PK-like) 306 624 IPR011009 -
Vian10g01196 648 Gene3D - 31 132 IPR038408 -
Vian10g01196 648 Gene3D - 142 242 IPR038408 -
Vian10g01196 648 ProSiteProfiles Gnk2-homologous domain profile. 31 132 IPR002902 -
Vian10g01196 648 ProSiteProfiles Gnk2-homologous domain profile. 137 242 IPR002902 -
Vian10g01196 648 Pfam Protein kinase domain 322 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01196 648 Coils Coil 286 306 - -
Vian10g01196 648 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 621 - -
Vian10g01196 648 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Vian10g01196 648 FunFam Cysteine-rich receptor-like protein kinase 2 31 132 - -
Vian10g01196 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Vian10g01196 648 Pfam Salt stress response/antifungal 47 129 IPR002902 -
Vian10g01196 648 Pfam Salt stress response/antifungal 145 239 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01196 Vian-Chr10 19812852 19815835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01196 1 648 Receptor kinase-like Gene Family AT1G70520 67.638 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian10g01196 Pkinase 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01196 - - gmx:100305420 1154.81