Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01189 ATGGAGCTTAGTAGTTTGGTTTTCTGGCTACTGGGGTTGCTGCTTTTGCAGTTGATGGAGATTTCTTCTGCTGCTCTTTCTCCATCTGGCATAAACTATGAAGTTGTAGCTCTGATGGCCATAAAGGGTGACTTGACTGATCCTCACAACGTTCTGGAAAATTGGGATTCTAGTTCTGTTGATCCATGTAGCTGGAGAATGGTTACTTGTTCCTCTGATGGCTCCGTTTCTGCATTGGGATTTCCGAGTCAGAACTTGTCTGGTACACTATCTCCCGGAATTGGAAACCTCACTAACTTGCAATCTGTGTTGCTTCAGAATAATGCCATTTCTGGTAGGATTCCTGCTGCAATAGGAAACTTGGAAAGGCTTCACACACTTGATCTTTCCAATAATGCATTTAGTGGTGAGATACCCAGTTCTTTGGGAGGCCTCAAGAACCTGAATTATTTTTTTAGCTCAGAGAACAAGGGGCAGATTCAAAGCTTTGATTTCTATCTAAAAGACAGTTATGTTAACTCTTATGACTTGAATATGTACAGGGACCTCTCCTACAACAATCTGAGTGGTTCCTTGCCTAGAATATCGGCAAGAACATTAAAGATTGTGGGTAACCCTTTAATTTGTGGTCCAAAAGCAAACAACTGTTCTTCTGTTTTACCGGAGCCACTTTCCTTCCCTCCAGATGCACTAAGAGGCCAATCTGATTCTGGTAAAAAAAGCCATCACGTGGCACTTGCTTTCGGTGCAAGCTTTGGTGCTGCATTTGTCATTGTGATTATAGTTGGGTTTCTTGTTTGGTGGCGATATAGACGCAACCAGCAGATATTCTTTGATGTCAACGCCGGTGGTGAGATCCAATTTCAAACAGAAGTTGAGACAATCAGTTTGGCTGTCCACCGGAATCTTCTCAGGCTTTCGGGGTTTTGCAGCACTCAGCATGAAAGGCTCCTCGTTTATCCATATATGTCTAATGGAAGTGTAGCCTCTAGATTAAAAGGTCACAAGGCTCTAGATTTTGGGCGAGCAGCGAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTCCACCAGGATGGAAGATTAAGTCAAATGGTGGACAAAGATCTAAAGGGAAACTTTGATCTGATTGAGTTAGAAGAAATGGTTCAGGTTGCACTCTTGTGCACACAGTTCAATCCTTCACACCGCCCCAAGATGTCAGAAGTATTAAAGATGTTGGAAGGGGATGGCTTGGCTGAGAGATGGGAGGCCTCACAGAGGATTGAAACACCAAGGTTTCGGTCTTGTGAGCCTCAAAGATATTCAGATTTAATAGAGGAATCTTCACTCATAATTGAAGCCATGGAGCTTTCTGGCCCTAGGTGA 1371 0.4333 MELSSLVFWLLGLLLLQLMEISSAALSPSGINYEVVALMAIKGDLTDPHNVLENWDSSSVDPCSWRMVTCSSDGSVSALGFPSQNLSGTLSPGIGNLTNLQSVLLQNNAISGRIPAAIGNLERLHTLDLSNNAFSGEIPSSLGGLKNLNYFFSSENKGQIQSFDFYLKDSYVNSYDLNMYRDLSYNNLSGSLPRISARTLKIVGNPLICGPKANNCSSVLPEPLSFPPDALRGQSDSGKKSHHVALAFGASFGAAFVIVIIVGFLVWWRYRRNQQIFFDVNAGGEIQFQTEVETISLAVHRNLLRLSGFCSTQHERLLVYPYMSNGSVASRLKGHKALDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLKGNFDLIELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQRIETPRFRSCEPQRYSDLIEESSLIIEAMELSGPR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01189 456 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 334 419 - -
Vian10g01189 456 SUPERFAMILY L domain-like 32 211 - -
Vian10g01189 456 Gene3D Ribonuclease Inhibitor 31 217 IPR032675 -
Vian10g01189 456 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vian10g01189 456 SUPERFAMILY Protein kinase-like (PK-like) 275 412 IPR011009 -
Vian10g01189 456 FunFam Leucine-rich repeat receptor-like kinase 33 160 - -
Vian10g01189 456 Gene3D Transferase(Phosphotransferase) domain 1 330 427 - -
Vian10g01189 456 Gene3D Phosphorylase Kinase; domain 1 273 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01189 Vian-Chr10 19601644 19606650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01189 332 456 Receptor kinase-like Gene Family AT5G16000 60.448 1.32e-45 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vian10g01189 LRRNT_2 5.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01189 - - vum:124829101 461.07